PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT06427

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 638aa MW: 71234.5 Da PI: 6.9809

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT06427	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.9	3.3e-15	320	379	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+ ++ a++k++g OIT06427 320 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARSYDLAALKYWG 379 78*****************988886678446***********************98 PP
2	AP2	45.7	1.6e-14	424	473	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OIT06427 424 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 473 9*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence
MKSLSNDDNS SNTNSNSHWL GFSLSPHINS LEGPPPDQHH SQPCSSDVPS SVPIRFSPAP 60 LTYPGMFYNT EGDNAAFFSS YSVMPLKSDG SLCIMKAFNR SQQPQGMVSS TPKLEDFFGD 120 ASIGTNHYED CNRGGMAHSL DNNIYYNQHQ QNETSNSQDF LNHFQDNSRQ LQQQHYYPDF 180 LALRGHELYH STEQGKTECN PQVPTMPVDE MSGMNNWVSR NYQNPNAHAH ALEQNMIGCM 240 ADNSGESGSS GAMTYGDFKS LSLSMSPGSQ SSCVTGTQQI SPTVADCIAM ETKKRGPEKV 300 ENQKQIVHRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQSR KGRQVYLGGY 360 DMEEKAARSY DLAALKYWGP STHINFPLEN YQQELEEMKN MTRQEYVANL RRKSSGFSRG 420 ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF 480 DISRYDVERI MESNTLLAGE LARRKKDTET SKVISNQILA NQNHIQNKEV SGNVVDWTMT 540 LHQSSSAGVD TNTMSSTLRE VDESARINTH LSNASSLVTS LDSSREGSPA KNNSHSMHFA 600 MPQSAPNLIT SPATNITSWI SSAQLRPNVP IFAAWTDA

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence

MKSLSNDDNS SNTNSNSHWL GFSLSPHINS LEGPPPDQHH SQPCSSDVPS SVPIRFSPAP  60
LTYPGMFYNT EGDNAAFFSS YSVMPLKSDG SLCIMKAFNR SQQPQGMVSS TPKLEDFFGD  120
ASIGTNHYED CNRGGMAHSL DNNIYYNQHQ QNETSNSQDF LNHFQDNSRQ LQQQHYYPDF  180
LALRGHELYH STEQGKTECN PQVPTMPVDE MSGMNNWVSR NYQNPNAHAH ALEQNMIGCM  240
ADNSGESGSS GAMTYGDFKS LSLSMSPGSQ SSCVTGTQQI SPTVADCIAM ETKKRGPEKV  300
ENQKQIVHRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQSR KGRQVYLGGY  360
DMEEKAARSY DLAALKYWGP STHINFPLEN YQQELEEMKN MTRQEYVANL RRKSSGFSRG  420
ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF  480
DISRYDVERI MESNTLLAGE LARRKKDTET SKVISNQILA NQNHIQNKEV SGNVVDWTMT  540
LHQSSSAGVD TNTMSSTLRE VDESARINTH LSNASSLVTS LDSSREGSPA KNNSHSMHFA  600
MPQSAPNLIT SPATNITSWI SSAQLRPNVP IFAAWTDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-148	AP2 family protein

Link Out ? help Back to Top
Ensembl	OIT06427