PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06404
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 544aa    MW: 60323.3 Da    PI: 5.5116
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06404genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.23.8e-1011845432374
      GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               v+ L+++Ae+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+      ++ +++++s+++++++++++k+fs++sPi+ fs +taNqa
  OIT06404 184 VDELIRFAECFEANAFQLAHVILARLNQRlRSAAGKPLQRAAFYFKEALQAQLAG------STRQTRPASSSDVIQTIKSYKIFSNISPIPMFSSFTANQA 278
               678*************************999************************......778888999999**************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
               +leav+g+  vH+iDfdi+ G++W++++++La+++    +++p lRiT+++++e   + e + ++e+L++fA+el++ fe+++++ +++e l+++++++  
  OIT06404 279 VLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAecrkANAPVLRITALVPEE--YAVESRLIRENLTQFARELNIGFEIDFVLIRTFELLSFKAIKFMD 377
               ********************************877666689***********66..99999**************************************** PP

      GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpres..eerikvErellgrei 294
               gE++aV l+ +++r         s    +++ ++++sP++vv+v++e  + ++++sF + +++ le+ys+l++sl +a+++  +  ++++k+E+++l ++i
  OIT06404 378 GEKTAVLLSPAIFRRI------GS---GFVNDLRRISPNMVVHVDSEglMGYGTASFRQTVIDGLEFYSTLLESLeAANIGGGNcgDWMRKIENFVLFPKI 469
               **************98......44...8*******************87788***********************88999999999*************** PP

      GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               v++va+ g++        ++W++++ +aGF+pv ls++a  qa++ll +v+++g++v +++++++l+W+dr+Lv++SaWr
  OIT06404 470 VEMVAAVGRR------GGGSWKDAMVAAGFRPVGLSQFADFQADCLLGRVQVRGFHVAKRQAEMLLCWHDRALVATSAWR 543
               *********8......99*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MKVPFSSNDN VSSKPLISNN NNNNNLRNAT FPAATNGPNL CYEPKSVLEL RRSPSPIVEK  60
QVITNPDFSA LCGGDDPLQL GDHVLSNFED WDSLMRELGL QDDSASLSKS NNPQLSLTQS  120
ESLTQFHNLS EFSADSTQFP TSDFSFSENF PQQFQSVNQG NFSNALDLSG DIHQNNWNVG  180
FDYVDELIRF AECFEANAFQ LAHVILARLN QRLRSAAGKP LQRAAFYFKE ALQAQLAGST  240
RQTRPASSSD VIQTIKSYKI FSNISPIPMF SSFTANQAVL EAVDGSMLVH VIDFDIGLGG  300
HWASFMKELA DKAECRKANA PVLRITALVP EEYAVESRLI RENLTQFARE LNIGFEIDFV  360
LIRTFELLSF KAIKFMDGEK TAVLLSPAIF RRIGSGFVND LRRISPNMVV HVDSEGLMGY  420
GTASFRQTVI DGLEFYSTLL ESLEAANIGG GNCGDWMRKI ENFVLFPKIV EMVAAVGRRG  480
GGSWKDAMVA AGFRPVGLSQ FADFQADCLL GRVQVRGFHV AKRQAEMLLC WHDRALVATS  540
AWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-149GRAS family protein