PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06167
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LSD
Protein Properties Length: 182aa    MW: 19187.4 Da    PI: 8.6032
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06167genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD138.91.4e-121942124
   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
              C+gCrt+L YPrGA++V+Ca+C++
  OIT06167 19 CSGCRTILLYPRGASNVCCAVCNA 42
              **********************97 PP

2zf-LSD145.61.1e-145882125
   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
              CggCrtlL+ PrGA+sVRC++C+tV
  OIT06167 58 CGGCRTLLMHPRGASSVRCSCCHTV 82
              ************************9 PP

3zf-LSD140.16.1e-1396119124
   zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
               Cg+Cr +L+YP GApsV+Ca+C+ 
  OIT06167  96 CGNCRMMLMYPCGAPSVKCAICHY 119
               **********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MSIWLKSFRR ADMQSQLMCS GCRTILLYPR GASNVCCAVC NALTAVPPPG MEMAQLICGG  60
CRTLLMHPRG ASSVRCSCCH TVNLVPGPNQ FAHVYCGNCR MMLMYPCGAP SVKCAICHYI  120
TNVNAGDGRV HVPNGTATPA SGSSSSTAKA RSQNQTVVVQ NPMSVDESGK LVSNVVVGVT  180
TT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.22e-60LSD family protein