PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT06167 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LSD | ||||||||
Protein Properties | Length: 182aa MW: 19187.4 Da PI: 8.6032 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.9 | 1.4e-12 | 19 | 42 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCrt+L YPrGA++V+Ca+C++ OIT06167 19 CSGCRTILLYPRGASNVCCAVCNA 42 **********************97 PP | |||||||
2 | zf-LSD1 | 45.6 | 1.1e-14 | 58 | 82 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRC++C+tV OIT06167 58 CGGCRTLLMHPRGASSVRCSCCHTV 82 ************************9 PP | |||||||
3 | zf-LSD1 | 40.1 | 6.1e-13 | 96 | 119 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Cr +L+YP GApsV+Ca+C+ OIT06167 96 CGNCRMMLMYPCGAPSVKCAICHY 119 **********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence |
MSIWLKSFRR ADMQSQLMCS GCRTILLYPR GASNVCCAVC NALTAVPPPG MEMAQLICGG 60 CRTLLMHPRG ASSVRCSCCH TVNLVPGPNQ FAHVYCGNCR MMLMYPCGAP SVKCAICHYI 120 TNVNAGDGRV HVPNGTATPA SGSSSSTAKA RSQNQTVVVQ NPMSVDESGK LVSNVVVGVT 180 TT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 2e-60 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT06167 |