PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT06062

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 505aa MW: 55602.6 Da PI: 5.2144

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT06062	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.4e-18	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l OIT06062 39 KGPWTSAEDAILVDYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 86 79******************************************9986 PP
2	Myb_DNA-binding	51.5	2.3e-16	92	135	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a+ ++ gRt++++k++w++ OIT06062 92 KGAFTPEEERRIIELHAKMGNK-WARMAADLP-GRTDNEIKNYWNT 135 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MSMTSESDDR MTSNVGVDSP SVEEACGGGN TGGGLPLKKG PWTSAEDAIL VDYVTKHGEG 60 NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGAFTPEEE RRIIELHAKM GNKWARMAAD 120 LPGRTDNEIK NYWNTRIKRR QRAGLPVYPP DICFQAISEN KQNEELGAFS STDAQYPDFL 180 PMNNYEIPAV EFKNLEFNQQ LCPPPLLDIP SGSLLDIPAR SLLAQGLNSA YYSRSFLSTV 240 HPTKRMRGSE SVFSGLNDDS SPLKNNDSFP SCHQYQNDGS LLAQSLGFSS SYYRNLTSDH 300 HPTSLGVIPG SHAHLNGNSS SSEPSRAKKL ELPSLQSQMA SWGLSSSPLP SLESVDTLIQ 360 SPPTDQTESC NLSPRNSGLL DAVLYEAQTM RASKNNLQQE SSDDVVDNSC PDLHETGWET 420 YGDPISPLGH SAASVFSEYT PTSGSSSEEP QLLTMPGCKV KQEKFDFGPY DGKEDASNPI 480 FSRPDYLLDS NCFSPMQNYV RTIWR

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MSMTSESDDR MTSNVGVDSP SVEEACGGGN TGGGLPLKKG PWTSAEDAIL VDYVTKHGEG  60
NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGAFTPEEE RRIIELHAKM GNKWARMAAD  120
LPGRTDNEIK NYWNTRIKRR QRAGLPVYPP DICFQAISEN KQNEELGAFS STDAQYPDFL  180
PMNNYEIPAV EFKNLEFNQQ LCPPPLLDIP SGSLLDIPAR SLLAQGLNSA YYSRSFLSTV  240
HPTKRMRGSE SVFSGLNDDS SPLKNNDSFP SCHQYQNDGS LLAQSLGFSS SYYRNLTSDH  300
HPTSLGVIPG SHAHLNGNSS SSEPSRAKKL ELPSLQSQMA SWGLSSSPLP SLESVDTLIQ  360
SPPTDQTESC NLSPRNSGLL DAVLYEAQTM RASKNNLQQE SSDDVVDNSC PDLHETGWET  420
YGDPISPLGH SAASVFSEYT PTSGSSSEEP QLLTMPGCKV KQEKFDFGPY DGKEDASNPI  480
FSRPDYLLDS NCFSPMQNYV RTIWR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11440.1	3e-81	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT06062