PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT06049

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 376aa MW: 42553.9 Da PI: 5.5075

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT06049	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.5e-12	175	226	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ OIT06049 175 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 226 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MEKRENSQAS LPTTFQMVGE TSHVANNTNQ MVDYLLNSHS VQQQQQQQHE SSLGFCPSGT 60 SLDKLSFADV MQFADFGPKL ALNQAKVSEE DVGIDPVYFL KFPVLNEKTL QDDDQETLTV 120 QQKEEKFKVV EEKANSSMQL PYVGENIERS PGNEGNKSNK RKRPRVKTTE EVESQRMTHI 180 AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI 240 YGDNGPRPLG DNSSIQNPNN PQQPIIFPLP NDYIEAGIQE ETAESKSCLA DVEVKLLGFD 300 AMIKILSRRR PGQLIKTIAA LEDMQLNILH TNITTIEQTV LYSFNVKISG ETRYTADDIA 360 NSIQQIFSFI HANSPI

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MEKRENSQAS LPTTFQMVGE TSHVANNTNQ MVDYLLNSHS VQQQQQQQHE SSLGFCPSGT  60
SLDKLSFADV MQFADFGPKL ALNQAKVSEE DVGIDPVYFL KFPVLNEKTL QDDDQETLTV  120
QQKEEKFKVV EEKANSSMQL PYVGENIERS PGNEGNKSNK RKRPRVKTTE EVESQRMTHI  180
AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI  240
YGDNGPRPLG DNSSIQNPNN PQQPIIFPLP NDYIEAGIQE ETAESKSCLA DVEVKLLGFD  300
AMIKILSRRR PGQLIKTIAA LEDMQLNILH TNITTIEQTV LYSFNVKISG ETRYTADDIA  360
NSIQQIFSFI HANSPI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	187	RMTHIAVERNRR
2	236	240	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-124	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT06049