PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05803

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CO-like

Protein Properties

Length: 405aa MW: 45055 Da PI: 5.8984

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05803	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21	7e-07	13	54	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+++ + + +C+ ++ +lC+ C +H H++ OIT05803 13 RVCDTCRSAACTVYCRADSAYLCAGCDARIHAAnlvasrHER 54 79****99*******************65677777765 PP
2	zf-B_box	28.9	2.3e-09	55	100	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC++C +H+ H +vp+ OIT05803 55 VWVCEACERAPAAFLCKADAASLCASCDADIHSAnplarrHHRVPI 100 689*****************************66899999877775 PP
3	CCT	69.7	7.2e-24	336	379	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ OIT05803 336 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 379 9*****************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MLKKENSSNN WARVCDTCRS AACTVYCRAD SAYLCAGCDA RIHAANLVAS RHERVWVCEA 60 CERAPAAFLC KADAASLCAS CDADIHSANP LARRHHRVPI MPIPGTLYGP PAVDTLSGGT 120 LMIGGPEGNA TEDDRFLSLT QDADDTTIDE EDEDEAASWL LLNPPVKNNN KNINNNNNQN 180 NYGMLFGGEV VDEYLDLAEY GGDNQFNDQY SVNQQQQHYS VPQKNYGGDS VVPVQDGQGK 240 SMILYHQQQQ HHQQQQQQNH HLSFQLGMEY DSSNTGYGYP ASMSHSVSMS SMDVSVVPES 300 ALSETSNSHP RPPKGTIDLF SGPPIQMPTQ LTPMDREARV LRYREKKKNR KFEKTIRYAS 360 RKAYAETRPR IKGRFAKRTD VEAEVDQMFS TQLIAESSYG IVPSF

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MLKKENSSNN WARVCDTCRS AACTVYCRAD SAYLCAGCDA RIHAANLVAS RHERVWVCEA  60
CERAPAAFLC KADAASLCAS CDADIHSANP LARRHHRVPI MPIPGTLYGP PAVDTLSGGT  120
LMIGGPEGNA TEDDRFLSLT QDADDTTIDE EDEDEAASWL LLNPPVKNNN KNINNNNNQN  180
NYGMLFGGEV VDEYLDLAEY GGDNQFNDQY SVNQQQQHYS VPQKNYGGDS VVPVQDGQGK  240
SMILYHQQQQ HHQQQQQQNH HLSFQLGMEY DSSNTGYGYP ASMSHSVSMS SMDVSVVPES  300
ALSETSNSHP RPPKGTIDLF SGPPIQMPTQ LTPMDREARV LRYREKKKNR KFEKTIRYAS  360
RKAYAETRPR IKGRFAKRTD VEAEVDQMFS TQLIAESSYG IVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-105	CO-like family protein

Link Out ? help Back to Top
Ensembl	OIT05803