PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT05740
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 732aa    MW: 80533.3 Da    PI: 5.9802
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT05740genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.64.9e-1962117156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +++ +++t++q++e+e++F+++++p+ ++r+eL k+l L+  qVk+WFqN+R+++k
  OIT05740  62 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGKRLALEPLQVKFWFQNKRTQMK 117
               688999***********************************************998 PP
2START228.51.9e-712504711206
               HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
     START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
               ela +a++el+++a+++ep+W+ s+     e++ ++e++++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW++ +a    ka+tlev+s+
  OIT05740 250 ELAVAAMEELIRMAQSGEPLWMPSPninstEILSEEEYVRNFPRGIGpkplaLKSEASRESAVVIMNHINLVEILMDVN-QWTNVFAglvsKAMTLEVLST 349
               57899***************************************999********************************.********************* PP

               T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
     START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
               g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ +    v R++++pSg+li++++ng+skvtwvehv+++++ +h+++
  OIT05740 350 GvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHADGTWAVVDVSLDNLRPTS----VSRCRRRPSGCLIQELPNGYSKVTWVEHVEVDEKAVHSIY 446
               ******************************************************975....8*************************************** PP

               HHHHHHHHHHHHHHHHHHTXXXXXX CS
     START 182 rslvksglaegaktwvatlqrqcek 206
               ++lv+sgla+gak+wvatl+rqce+
  OIT05740 447 KPLVNSGLAFGAKRWVATLDRQCER 471
               ***********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    
MFKGNMFDSH HHLLDMSAHN KTPENEMDFI RDEEFESKSG TDIMEAPNSG DDQDPNQRPN  60
KKKRYHRHTQ HQIQEMESFF KECPHPDDKQ RKELGKRLAL EPLQVKFWFQ NKRTQMKAQH  120
ERSENTQLRN ENEKLRAENI RYKEALSNAA CPNCGGPAAI GEMSFDEQHL RIENARLREE  180
IDRISGIAAK YVGGKPLLNF PQIPPPEASC SLDLGFRPQS SLLGEMYSAG DLLRTAISGL  240
TDAEKPIVIE LAVAAMEELI RMAQSGEPLW MPSPNINSTE ILSEEEYVRN FPRGIGPKPL  300
ALKSEASRES AVVIMNHINL VEILMDVNQW TNVFAGLVSK AMTLEVLSTG VAGNYNGALQ  360
VMTAEFQVPS PLVPTRENYF VRYCKQHADG TWAVVDVSLD NLRPTSVSRC RRRPSGCLIQ  420
ELPNGYSKVT WVEHVEVDEK AVHSIYKPLV NSGLAFGAKR WVATLDRQCE RLASAMANNI  480
PTGDVGIITS PAGRKSMLKL AERMVMSFCA GVGASTTHTW TTLSGSGADD VRVMTRKSID  540
DPGRPPGIVL SAATSFWLPV SPKRVFDFLR DENSRSEWDI LSNGGLVQEM AHIANGRDPG  600
NCVSLLRVNS GNSNQSNMLI LQESSTDSTG SYVIYAPVDI VAMNVVLSGG DPDYVALLPS  660
GFAILPDGST IHSGDNPEVI SNGGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV  720
ERIKTAVTCE NA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein