PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05662

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 908aa MW: 99077.3 Da PI: 6.9624

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05662	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.9	4.6e-19	337	436	1	98
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k l+ sd+++ grlvlpkk+ae++ + ++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++lv++ OIT05662 337 FEKMLSASDAGRIGRLVLPKKCAEAYfppiS--NPEGLPLKVQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRIE-PEGKLVMG 433 89************************543..556667***********99899999999.*******************887.56656665 PP EE- CS B3 96 vfr 98 ++ OIT05662 434 CRK 436 554 PP

Sequence ? help Back to Top
Protein Sequence Length: 908 aa Download sequence
MSSSAAPSSA TKVCFNTNCN QFVERPKKGW RRRTGEFADL CDRCASAYDD GKFCETFHLK 60 TSGWRSCESC GKQIHCGCIV SFHTFVLLDA GGIECLSCAR KSFILTPNPA WPPPSLFHPL 120 QPERIKDVTN WNPIAGSGPV PWRQAPSLFN GSAIQNELQP RTPFLDATGS VDRLCLGERP 180 SASSSDNNRK DSCEKLMNGK LKIGVPGTLE NGYAGLNHEE PPKSCISGPP QLSYAKNDLS 240 APSFSLTIGS ACKNEPTDHS KVSVSLQQQT TLSTPLGKQL GGHATVDYAG ETQVRNSKTR 300 GDGRGKHHLL PRYWPRITDE ELQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE 360 AYFPPISNPE GLPLKVQDLK GKEWMFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDIVT 420 FSRIEPEGKL VMGCRKASTT LTADQGSEAC SNSNGVVTNG NVNTKSTKFS EEVLENSTKK 480 GFSSTTHVAP ADSTIAWAET KMSDDMATEF IGNNRSIRCK RKSSTLGSKS KRLRIDNEDL 540 VELKVTVVQA QGLMRPPSSD APTVIVIEGC EFEEYEQDAP IIGRPAIPSV DHSGEKIQWV 600 QCEDCFKWRK VPDSALLPSR WTCSENSWDS ERSVCSADQE LTADHLRDLL PRINKAAKKM 660 KASKQETDVE ALDGLDALAN LAILDEGETL PASSQATTKH PRHRPGCTCI VCIQPPSGKG 720 PKHKQSCDCI VCKSVKRRFK TLMLKREKKL SEKEAEAACQ KLQPQLAGQL LDAGDIQESN 780 DDAGHFSPQR GELNNEGYAD DPNYPNEKKS SALPFKGEID LNAKPERDDE LSPGSDSGSI 840 MRILQVAAEQ YVRHCGNGSF TGNHENGDGT GETNPNNCVT VGGTNQTDVD HNRPLSIGTA 900 ASLAPNGQ

Sequence ? help Back to Top

Protein Sequence Length: 908 aa Download sequence

MSSSAAPSSA TKVCFNTNCN QFVERPKKGW RRRTGEFADL CDRCASAYDD GKFCETFHLK  60
TSGWRSCESC GKQIHCGCIV SFHTFVLLDA GGIECLSCAR KSFILTPNPA WPPPSLFHPL  120
QPERIKDVTN WNPIAGSGPV PWRQAPSLFN GSAIQNELQP RTPFLDATGS VDRLCLGERP  180
SASSSDNNRK DSCEKLMNGK LKIGVPGTLE NGYAGLNHEE PPKSCISGPP QLSYAKNDLS  240
APSFSLTIGS ACKNEPTDHS KVSVSLQQQT TLSTPLGKQL GGHATVDYAG ETQVRNSKTR  300
GDGRGKHHLL PRYWPRITDE ELQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE  360
AYFPPISNPE GLPLKVQDLK GKEWMFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDIVT  420
FSRIEPEGKL VMGCRKASTT LTADQGSEAC SNSNGVVTNG NVNTKSTKFS EEVLENSTKK  480
GFSSTTHVAP ADSTIAWAET KMSDDMATEF IGNNRSIRCK RKSSTLGSKS KRLRIDNEDL  540
VELKVTVVQA QGLMRPPSSD APTVIVIEGC EFEEYEQDAP IIGRPAIPSV DHSGEKIQWV  600
QCEDCFKWRK VPDSALLPSR WTCSENSWDS ERSVCSADQE LTADHLRDLL PRINKAAKKM  660
KASKQETDVE ALDGLDALAN LAILDEGETL PASSQATTKH PRHRPGCTCI VCIQPPSGKG  720
PKHKQSCDCI VCKSVKRRFK TLMLKREKKL SEKEAEAACQ KLQPQLAGQL LDAGDIQESN  780
DDAGHFSPQR GELNNEGYAD DPNYPNEKKS SALPFKGEID LNAKPERDDE LSPGSDSGSI  840
MRILQVAAEQ YVRHCGNGSF TGNHENGDGT GETNPNNCVT VGGTNQTDVD HNRPLSIGTA  900
ASLAPNGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-149	B3 family protein

Link Out ? help Back to Top
Ensembl	OIT05662