PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT05398
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 544aa    MW: 60469.1 Da    PI: 6.507
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT05398genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.62.4e-1311745441374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lL++cAeav++ d + a+ l++ l++++s +g+pmqRl ay++e+L+arl++s+s++yk+l+++e +   ss+ l++++++++++P++kf+++ aN  
  OIT05398 174 LKDLLVACAEAVAEADISSAEGLMNVLEQRVSVSGEPMQRLSAYMLEGLRARLLSSGSTIYKKLKCNEPT---SSDLLSYMQVLYHICPYYKFAYMSANVV 271
               5789*****************************************************************9...9*************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I ea+ +e+r+HiiDf+i qG QW+ Ll+ LasRp+gpp +R+Tgv++++s   +   l+ +gerL+k+Ae++gvpfef+  +a +  ++ele+L+v++gE
  OIT05398 272 IGEAMRNENRIHIIDFQIAQGSQWMFLLHDLASRPGGPPYVRVTGVDDSQSAhaRGGGLKLVGERLKKVAESCGVPFEFHG-AALSGCKVELENLQVRHGE 371
               ************************************************9988889999***********************.8999*************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               alaVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v++veqe+++n+++Fl rf e+l+yy+a+f+s++a  +r++++ri+ E+++++r++vn++ace
  OIT05398 372 ALAVNFPYMLHHMPDESVSTMNHRDRLLRLVKSLSPKIVTLVEQESNTNTAPFLPRFRETLDYYTAMFESTDAARSRDDKQRISAEEHCIARDVVNIIACE 472
               **************************************************************************9************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               ga+r+erhe ++kWr+rl +aGF+p pls ++ + +k +l++++ + y++ e++++l+lgWk+r+L + SaWr
  OIT05398 473 GADRVERHEPFGKWRSRLVMAGFTPCPLSPSVGEAIKDMLKEYSPN-YKLSESQEALYLGWKNRALATSSAWR 544
               ********************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MQASQGPRRS GDVHRLYHQP MQQVQQYYTP YQAVDNNIYN DSSSSGTQFS FQTQNEQVFT  60
LDSLPATDYA IYDAAPSVSI SSNRSPFSPQ CSQSYISDPH HSFDNTCGSP VSGCSGVDDG  120
NGTKHVLREL KNKLLGPESN IDDSSSCSFN GVISKPSSLI KWNQVLDIAS RLDLKDLLVA  180
CAEAVAEADI SSAEGLMNVL EQRVSVSGEP MQRLSAYMLE GLRARLLSSG STIYKKLKCN  240
EPTSSDLLSY MQVLYHICPY YKFAYMSANV VIGEAMRNEN RIHIIDFQIA QGSQWMFLLH  300
DLASRPGGPP YVRVTGVDDS QSAHARGGGL KLVGERLKKV AESCGVPFEF HGAALSGCKV  360
ELENLQVRHG EALAVNFPYM LHHMPDESVS TMNHRDRLLR LVKSLSPKIV TLVEQESNTN  420
TAPFLPRFRE TLDYYTAMFE STDAARSRDD KQRISAEEHC IARDVVNIIA CEGADRVERH  480
EPFGKWRSRL VMAGFTPCPL SPSVGEAIKD MLKEYSPNYK LSESQEALYL GWKNRALATS  540
SAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein