PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05333

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CO-like

Protein Properties

Length: 416aa MW: 47033.3 Da PI: 4.6865

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05333	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.9	2.3e-09	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k++++fC ++ +lC++C ++ H+ H++v OIT05333 17 ARACDSCLSKRARWFCPADDAFLCQSCDVSVHSAnqlasrHERV 60 578*****************************667888888876 PP
2	CCT	67.6	3.3e-23	358	401	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ OIT05333 358 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRLKGRFVKRT 401 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MMTSESKTAN AIGGKTARAC DSCLSKRARW FCPADDAFLC QSCDVSVHSA NQLASRHERV 60 RLETSSNKST DTKFVDQTSQ PSWHQGFTRK ARTPRNGKNK STQIGQRKKD EENMVPEMGN 120 EENSPDENEE QLLYRVPVFD PFEAELCSVP DEVVDETTTI NDLDILLNSE DACDDLGIPE 180 FLSSEIELAE FAADVESLLG EEFKVVAEEE DEEQSRLING AVEDNKAIKI EVEDEEMRAV 240 VACHLDPELD MPREALNWDF EYEETPEQKV NMAAATEFVP SAECGGSKAD AKRRLLLRLN 300 YEEVISAWPN QSSPWTNGIR PHFNPDDCWP DFLETCIGEG GGHQPYGGGN VRGGDGGREA 360 RVSRYREKRR TRLFSKKIRY EVRKLNAEKR PRLKGRFVKR TTSFSAPGFP YLMNKR

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MMTSESKTAN AIGGKTARAC DSCLSKRARW FCPADDAFLC QSCDVSVHSA NQLASRHERV  60
RLETSSNKST DTKFVDQTSQ PSWHQGFTRK ARTPRNGKNK STQIGQRKKD EENMVPEMGN  120
EENSPDENEE QLLYRVPVFD PFEAELCSVP DEVVDETTTI NDLDILLNSE DACDDLGIPE  180
FLSSEIELAE FAADVESLLG EEFKVVAEEE DEEQSRLING AVEDNKAIKI EVEDEEMRAV  240
VACHLDPELD MPREALNWDF EYEETPEQKV NMAAATEFVP SAECGGSKAD AKRRLLLRLN  300
YEEVISAWPN QSSPWTNGIR PHFNPDDCWP DFLETCIGEG GGHQPYGGGN VRGGDGGREA  360
RVSRYREKRR TRLFSKKIRY EVRKLNAEKR PRLKGRFVKR TTSFSAPGFP YLMNKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	369	385	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	6e-77	CO-like family protein

Link Out ? help Back to Top
Ensembl	OIT05333