PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05313

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 370aa MW: 41719.1 Da PI: 7.5519

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05313	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.4	1.1e-15	49	108	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g OIT05313 49 SIYRGVTRHRWTGRYEAHLWDkNCWNEtqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 108 57*****************999966656446***********************98 PP
2	AP2	51.2	3.2e-16	151	202	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g OIT05313 151 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 202 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MAKTSKCNQK NGTTTSSSSS SNKSNGNAIG KAKRTRKSVP RDSPPQRSSI YRGVTRHRWT 60 GRYEAHLWDK NCWNETQNKK GRQVYLGAYD DEEAAAHAYD LAALKYWGQD TILNFPVLTY 120 EKELKEMEAQ SKEEYIGSLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL 180 GTYATQEEAA TAYDMAAIEY RGLNAVTNFD LSRYIKWLRP SNQTNNITTI NNPSNSIEPN 240 PSPNADDIHT MPNTKEEMEC SFLRQQQQQS SNSDATTVAL PHPAAGATAS SALGLLLQSS 300 KFKEMLERTS AADCPETPPE PDRPRRSFPD DIQTYFDCQE SSSFIEEHDI IFGDLDSFAS 360 PNMFQCELDS

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MAKTSKCNQK NGTTTSSSSS SNKSNGNAIG KAKRTRKSVP RDSPPQRSSI YRGVTRHRWT  60
GRYEAHLWDK NCWNETQNKK GRQVYLGAYD DEEAAAHAYD LAALKYWGQD TILNFPVLTY  120
EKELKEMEAQ SKEEYIGSLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL  180
GTYATQEEAA TAYDMAAIEY RGLNAVTNFD LSRYIKWLRP SNQTNNITTI NNPSNSIEPN  240
PSPNADDIHT MPNTKEEMEC SFLRQQQQQS SNSDATTVAL PHPAAGATAS SALGLLLQSS  300
KFKEMLERTS AADCPETPPE PDRPRRSFPD DIQTYFDCQE SSSFIEEHDI IFGDLDSFAS  360
PNMFQCELDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-94	AP2 family protein

Link Out ? help Back to Top
Ensembl	OIT05313