PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT05310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 247aa MW: 26822.5 Da PI: 7.8877 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.1 | 1.6e-29 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C++C+vlr++C+++C + p++ p++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +P+yG++g+++++++ql+q+++e++l OIT05310 4 SCNGCRVLRKGCNEKCSIKPCLqwiksPEAQSNATIFLAKFYGRAGLLNLINSGPDHLRPAIFRSLLYEACGRIVNPIYGSTGLLTSGNWQLCQAAVEAVL 104 6************************************************************************************************9988 PP DUF260 97 lke 99 ++ OIT05310 105 SGA 107 765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MRLSCNGCRV LRKGCNEKCS IKPCLQWIKS PEAQSNATIF LAKFYGRAGL LNLINSGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSTGLLTS GNWQLCQAAV EAVLSGASIE KLSLDSAVNS 120 VCPSLQACDI RHVSKENDLT PDLHKVKMRT KFKRVSAKPQ QRNQSPEVDD AARVMWSWSH 180 KEEAIGSPSR DSGLSQQRDG ESGDADSGSV ETVEASLAKL DESNVGLELT LGLQPVMMSP 240 ECGTTRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-80 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT05310 |