PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05251

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 426aa MW: 47424 Da PI: 6.4163

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05251	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.3	5.8e-08	340	380	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L OIT05251 340 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 380 69****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MESLNWDESP VFQEFGASFD PIHVISNWNM PQRQEAAVRL AADSMAAKSA ADLSRDCVEN 60 GFSSSPILNM PNYISDSNPM ALNGLMANFS SNGQVQEIKP APKLLSNTCS LESLDCLLSA 120 TTTTNNTDTS IEDDGMSMIF ADNSKSLWNF NSSGESAIHN ASSEALKQSP GYQQLLTCPS 180 GHEILQEEER KRKPYKPIKA NELDETVSES SPNHKYNKRS HKQALENSPS QFNLFESDSL 240 NGDYGNFQVI SEKQAKSKKP RLITESYNKP RPSSSNINFQ QASSSVSSID QEPDPEAIAQ 300 MKEMIYRAAA FRPVNFGPEA PEKPKRKNVR ISTDPQTVAA RQRRERISER IRVLQRLVPG 360 GSKMDTASML DEAANYLKFL RSQVKALEAI GQKQDPFSSI PFNYPFPMQL PHFPLQNPNP 420 IHGPKT

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MESLNWDESP VFQEFGASFD PIHVISNWNM PQRQEAAVRL AADSMAAKSA ADLSRDCVEN  60
GFSSSPILNM PNYISDSNPM ALNGLMANFS SNGQVQEIKP APKLLSNTCS LESLDCLLSA  120
TTTTNNTDTS IEDDGMSMIF ADNSKSLWNF NSSGESAIHN ASSEALKQSP GYQQLLTCPS  180
GHEILQEEER KRKPYKPIKA NELDETVSES SPNHKYNKRS HKQALENSPS QFNLFESDSL  240
NGDYGNFQVI SEKQAKSKKP RLITESYNKP RPSSSNINFQ QASSSVSSID QEPDPEAIAQ  300
MKEMIYRAAA FRPVNFGPEA PEKPKRKNVR ISTDPQTVAA RQRRERISER IRVLQRLVPG  360
GSKMDTASML DEAANYLKFL RSQVKALEAI GQKQDPFSSI PFNYPFPMQL PHFPLQNPNP  420
IHGPKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	341	346	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	3e-65	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT05251