PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT05082 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 22336.3 Da PI: 4.7622 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 74.7 | 1.7e-23 | 5 | 74 | 31 | 100 |
DUF260 31 anvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 a++hk+FGasnv+kll+++p ++r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lke+ OIT05082 5 AAIHKVFGASNVSKLLAHIPVTDRGEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQ 74 579**************************************************************99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence |
MTGSAAIHKV FGASNVSKLL AHIPVTDRGE AAVTIAYEAQ ARLQDPIYGC VSHIFALQQQ 60 VVNLQAQLAS LKEQAAHQNL QNGSNYANPN YEKFQDLQSW FHQSENSNTN MSQFDSSLTS 120 NNIGSTPYYG SHENMTSNNY HMGSYENMML TKENMSSFEE GSCSIDSYDM QTDHHNSQWT 180 FQDDADDLQS VAFRYLQHS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 8e-29 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT05082 |