PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04895

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 313aa MW: 34605.5 Da PI: 6.1626

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04895	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.7	2.2e-39	10	110	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 aCaaCk++rr+C++dC+lapyfpa+qpk f+n+h+lFG+sn+lk+lk+l++++++ am+s++y+A+ar + PvyG+v+ i++l +++ ++el++++++l OIT04895 10 ACAACKYQRRRCTSDCPLAPYFPADQPKMFQNAHRLFGVSNILKILKQLDPSQKKVAMKSIIYQANARDKHPVYGCVAEIQNLVFNIQLYEEELQAVHAQL 110 7***********************************************************************************************99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MTLKGGTSQA CAACKYQRRR CTSDCPLAPY FPADQPKMFQ NAHRLFGVSN ILKILKQLDP 60 SQKKVAMKSI IYQANARDKH PVYGCVAEIQ NLVFNIQLYE EELQAVHAQL AFYRQQQQHQ 120 QQEISSTALS DSVSHIQLGM PPPPAVAAPP PPPQVSNGNG LTLFHQDAPS QQYNAAVNAN 180 ALPVQSYPSY SNNSYAAYNN NTTFVDTKEN NAVNSLWIQQ SCGNSACNNN TMIMQSQLPA 240 SQAISVPPDV THDYDEIHPF FDTIDDRQSY IDSKEAYDSS SESSLKDTRH SVEHVAENEL 300 KSAAACFTLT SVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	4e-52	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT04895