PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT04895
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 313aa    MW: 34605.5 Da    PI: 6.1626
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT04895genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.2e-39101101101
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
               aCaaCk++rr+C++dC+lapyfpa+qpk f+n+h+lFG+sn+lk+lk+l++++++ am+s++y+A+ar + PvyG+v+ i++l  +++  ++el++++++l
  OIT04895  10 ACAACKYQRRRCTSDCPLAPYFPADQPKMFQNAHRLFGVSNILKILKQLDPSQKKVAMKSIIYQANARDKHPVYGCVAEIQNLVFNIQLYEEELQAVHAQL 110
               7***********************************************************************************************99885 PP

Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MTLKGGTSQA CAACKYQRRR CTSDCPLAPY FPADQPKMFQ NAHRLFGVSN ILKILKQLDP  60
SQKKVAMKSI IYQANARDKH PVYGCVAEIQ NLVFNIQLYE EELQAVHAQL AFYRQQQQHQ  120
QQEISSTALS DSVSHIQLGM PPPPAVAAPP PPPQVSNGNG LTLFHQDAPS QQYNAAVNAN  180
ALPVQSYPSY SNNSYAAYNN NTTFVDTKEN NAVNSLWIQQ SCGNSACNNN TMIMQSQLPA  240
SQAISVPPDV THDYDEIHPF FDTIDDRQSY IDSKEAYDSS SESSLKDTRH SVEHVAENEL  300
KSAAACFTLT SVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.14e-52LBD family protein