PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04804

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 551aa MW: 62289.5 Da PI: 7.6225

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04804	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.7	2.5e-19	26	116	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ffkv+ d + +++l++p +fa++ ++ ++++ led+sg++W+vk+ ++++g+ +++GW eF +++gL+ gDf+vF++++ + f +v++++k OIT04804 26 FFKVM--IDKSFLKILYFPPTFARSVSHL--TDQETYLEDSSGQRWRVKV--CNHKGSLAIRQGWPEFSSEHGLNLGDFLVFYYVEGQYF--LVQIYDK 116 89999..77777788********9766..4568***********..*****************************9976666..9999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MGCEKEASDE CKQNGFLFHG KRVSSFFKVM IDKSFLKILY FPPTFARSVS HLTDQETYLE 60 DSSGQRWRVK VCNHKGSLAI RQGWPEFSSE HGLNLGDFLV FYYVEGQYFL VQIYDKSGCQ 120 KIKFYSDFGK GKRKIRTYPE ATSQVKLLQT TDINPANKRS KISAVSESEK VPCKTHITKF 180 ATNIDADTGK GQLVYPAVYV DESFCMIDRD AQYHQGDDRL CLHLSSFEMP ASKPLAEGTS 240 SLLKADGGNS NHVETNLRSQ TEPNLVVVAD YLNSEELLPK FEAEITGTDM VPAEDIPLLS 300 QKDQNDCPSG IISSSFLKRA ANVNKNDDVS NVTKYQNHWM STDTKSMMLQ SDNKDGRCTG 360 SNQITREKSN EASQFARETR LVKKEFKDTA ATAYYPARAI SASETRLVKK EFEETAAKAY 420 YPARAISDSG KEPANGNEKV IKCEPADSGD MPSLTAVSYS CLLEVDGRDF LELPESWRKY 480 LMKKAKLERW IIFLRGPDKK IWPILYHRRA GVDVLTNGWK IFAAAYGLNR GDDCLFELEN 540 KWECIFAVRK L

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MGCEKEASDE CKQNGFLFHG KRVSSFFKVM IDKSFLKILY FPPTFARSVS HLTDQETYLE  60
DSSGQRWRVK VCNHKGSLAI RQGWPEFSSE HGLNLGDFLV FYYVEGQYFL VQIYDKSGCQ  120
KIKFYSDFGK GKRKIRTYPE ATSQVKLLQT TDINPANKRS KISAVSESEK VPCKTHITKF  180
ATNIDADTGK GQLVYPAVYV DESFCMIDRD AQYHQGDDRL CLHLSSFEMP ASKPLAEGTS  240
SLLKADGGNS NHVETNLRSQ TEPNLVVVAD YLNSEELLPK FEAEITGTDM VPAEDIPLLS  300
QKDQNDCPSG IISSSFLKRA ANVNKNDDVS NVTKYQNHWM STDTKSMMLQ SDNKDGRCTG  360
SNQITREKSN EASQFARETR LVKKEFKDTA ATAYYPARAI SASETRLVKK EFEETAAKAY  420
YPARAISDSG KEPANGNEKV IKCEPADSGD MPSLTAVSYS CLLEVDGRDF LELPESWRKY  480
LMKKAKLERW IIFLRGPDKK IWPILYHRRA GVDVLTNGWK IFAAAYGLNR GDDCLFELEN  540
KWECIFAVRK L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53310.1	3e-10	B3 family protein

Link Out ? help Back to Top
Ensembl	OIT04804