PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04775

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 849aa MW: 93828.4 Da PI: 7.8274

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04775	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.4	3e-21	757	837	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++e+++Li++r e+++r++ + +++lWee+s+++ ++g++rsp qCk+ w +l ++y++ k +k+ ++++pyf++++ OIT04775 757 RWKHDEIKKLIKLRGELHSRFQVVRGRMALWEEISSNLLSTGVNRSPAQCKSLWASLVQKYEESKSDKKS-----QEKWPYFEEMN 837 8**************************************************************99998.....578*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 849 aa Download sequence
MAAFSAISLC PYKLCHQLNP SKRYISCYTP SSSTIGVRGS KGPRRRPAKT EGAGRSIDDS 60 VQRRMEHFYE GADGPPLRVL PIGGLGEIGM NCMLVGNYDR YILIDAGIMF PGYEDLGVQK 120 IIPDTTFIKK WSHKIEAVVI THGHEDHIGA LPWVIPALDS HTPIFASSFT MELIKKRLKE 180 FGIFVPSRLK VFKTRRKFTA GPFEVEPITV THSIPDCSGI VLRCSDGTIL HTGDWKIDES 240 PLDGKVFDRE GLEELSKEGV TLMMSDSTNV LSPGRTLSET VVADSLLRHI SAAKGRVITT 300 QFASNIHRLG SVKAAADLTG RKLVFVGMSL RTYLDAAWKD GKAPIDPSTL VKVEDIDAYA 360 PKDLLIVTTG SQAEPRAALN LASYGSSHSL KLNKEDIVLY SAKVIPGNET RVMEMLNRIS 420 DIGSTIVMGK NELLHTSGHA HREELEEVLK IVKPQHFLPI HGELLFLKEH ELLGKSTGIR 480 HTAVIKNGEM LGVSHLRNRK VLSNGFISLG KENLQLMYSD GDKAFGTAAE LCIDERQRIA 540 SDGIIVVSME ILRPQSTDGA TEKALKGKIR ITTRCLWLDK GKLLDALHKA AHAALSSCPL 600 SCPLPHMERT VSEVLRKMVR KYSSKRPEVI AIAFENPAGV LADEINGKLS GKSHVGFSAL 660 RNVMDEDQKG KQASEARAEE GPGPGYPIDD AAEQVEGDDM DIERLTHDRA TTSSSNSGDE 720 YSTTTEESGS PREESIQIDS GFPESMMKSS KPLKRNRWKH DEIKKLIKLR GELHSRFQVV 780 RGRMALWEEI SSNLLSTGVN RSPAQCKSLW ASLVQKYEES KSDKKSQEKW PYFEEMNEIL 840 SDLEATAQK

Sequence ? help Back to Top

Protein Sequence Length: 849 aa Download sequence

MAAFSAISLC PYKLCHQLNP SKRYISCYTP SSSTIGVRGS KGPRRRPAKT EGAGRSIDDS  60
VQRRMEHFYE GADGPPLRVL PIGGLGEIGM NCMLVGNYDR YILIDAGIMF PGYEDLGVQK  120
IIPDTTFIKK WSHKIEAVVI THGHEDHIGA LPWVIPALDS HTPIFASSFT MELIKKRLKE  180
FGIFVPSRLK VFKTRRKFTA GPFEVEPITV THSIPDCSGI VLRCSDGTIL HTGDWKIDES  240
PLDGKVFDRE GLEELSKEGV TLMMSDSTNV LSPGRTLSET VVADSLLRHI SAAKGRVITT  300
QFASNIHRLG SVKAAADLTG RKLVFVGMSL RTYLDAAWKD GKAPIDPSTL VKVEDIDAYA  360
PKDLLIVTTG SQAEPRAALN LASYGSSHSL KLNKEDIVLY SAKVIPGNET RVMEMLNRIS  420
DIGSTIVMGK NELLHTSGHA HREELEEVLK IVKPQHFLPI HGELLFLKEH ELLGKSTGIR  480
HTAVIKNGEM LGVSHLRNRK VLSNGFISLG KENLQLMYSD GDKAFGTAAE LCIDERQRIA  540
SDGIIVVSME ILRPQSTDGA TEKALKGKIR ITTRCLWLDK GKLLDALHKA AHAALSSCPL  600
SCPLPHMERT VSEVLRKMVR KYSSKRPEVI AIAFENPAGV LADEINGKLS GKSHVGFSAL  660
RNVMDEDQKG KQASEARAEE GPGPGYPIDD AAEQVEGDDM DIERLTHDRA TTSSSNSGDE  720
YSTTTEESGS PREESIQIDS GFPESMMKSS KPLKRNRWKH DEIKKLIKLR GELHSRFQVV  780
RGRMALWEEI SSNLLSTGVN RSPAQCKSLW ASLVQKYEES KSDKKSQEKW PYFEEMNEIL  840
SDLEATAQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIT04775