PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OIT04687 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 70aa MW: 8098.24 Da PI: 8.9075 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101.9 | 5.8e-32 | 1 | 70 | 3 | 71 |
DUF260 3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearard 71 aaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++ reda++sl+yeA+ r+rd OIT04687 1 AACKFLRRKCQPECVFAPYFPPDQPRKFANVHKIFGASNVTKLLNELQPHHqREDAVNSLAYEADTRLRD 70 8**********************************************76655***************998 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 70 aa Download sequence |
AACKFLRRKC QPECVFAPYF PPDQPRKFAN VHKIFGASNV TKLLNELQPH HQREDAVNSL 60 AYEADTRLRD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G65620.3 | 1e-42 | LBD family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OIT04687 |