PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT04660
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 851aa    MW: 94566 Da    PI: 6.6657
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT04660genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.89.7e-24146247199
               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
               f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el+v+
  OIT04660 146 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELRVG 243
               99*****************************7333.34459************************************************..449999**** PP

               EE-S CS
        B3  96 vfrk 99 
               v+r+
  OIT04660 244 VRRA 247
               *996 PP
2Auxin_resp122.14e-40272354183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++tk++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp rWp+SkWr+Lk
    OIT04660 272 AWHAIQTKTMFTVYYKPRTSPAEFIVPYDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGTEDSDPKRWPESKWRCLK 354
                 89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    
MATSEVSIKG YSEPIDGSRP VSETIRSAPV VGKVDAETAL YTELWRACAG PLVTVPREGE  60
LVYYFPQGHI EQVEASTNQV ADQQMPLYNL PSKILCRVVN VLLKAEPDTD EVFAQVTLMP  120
EPNQDENTVK KESMRPPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSRQ  180
PPTQELVAKD LHGNEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENGEL  240
RVGVRRAMRQ QGNAPSSVIS SHSMHLGVLA TAWHAIQTKT MFTVYYKPRT SPAEFIVPYD  300
QYMESVKNNY SIGMRFKMRF EGEEAPEQRF TGTIVGTEDS DPKRWPESKW RCLKVRWDEN  360
STIPRPDRVS PWKIEPALSP PALNAPSIAR PKRPRSSILP SSPDSSVLSR EGSSRITADP  420
SQASGFSRVL QGQELSTLRG SFAESNDSDI SEKPMLWPPS VDDEKIDIHS ASKRYLSDKW  480
LPLGRPESSL TDLLSGFGVQ NNSSHGFCLP SADQTAFGAS LVKRQAQDQE KDFSLLGKPW  540
SLLSSSLSLN LMDSGSKAPG QGGDTPYQMQ GDARYSGFGE FSVLPGHRVD NQQGSWFMPQ  600
SVSPYFQLSS HSRELMHKPT VVQKPEAVKP KEGNCKLFGI PLTSNVCTDP VMTRKSSLMD  660
SASNMNIGIN SHQSPATDSD QRSEQSKGSK VLDDGITAND QDKQFHTSHL AARDRDAKGH  720
SSSTRSCTKV HKQGTALGRS VDLAKFNNYD ELIAELDQLF DFNGELKARS KSWLVVYTDD  780
EGDMMLVGDD PWQEFCGMVR KIFIYTKEEV QRMNPGTLNS KGEDTSSVAE GSEAKEVKSL  840
QHPSESGQEE S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein