PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04472

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 350aa MW: 37717.5 Da PI: 7.0695

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04472	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223.9	3.3e-69	115	276	3	155
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa............aeaaskrkrelkskkqsalsstkl 91 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+++++++++++ +++++kr+re ++s+l +t++ OIT04472 115 GGGISCQDCGNQAKKDCEHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTTLQQQQEEQQqqqqqqqtlqlhRDNNPKRQRE--DPSASSLVCTRI 213 5789*************************************************99988877775555555554433333333333..355667777776 PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 ++ ++ le+ ++P++v+s+avf+cvr+ssvdd+++++aYqtav+igGhvfkGiLydqG+e++ OIT04472 214 LPSS-TSGLEVGNFPAKVNSNAVFHCVRMSSVDDADDQFAYQTAVNIGGHVFKGILYDQGPENQ 276 6654.55899999**********************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MAGFFSLGGG AASSSQAQDQ QHQQSTNNPP TEISPESWFL YRNDQELPTY RGFELWQTSN 60 SQPQIRHPIN PLQDLYPTAA VGLGVGPSRS GFTMTPARPD HDPSSGGLVM MRSGGGGISC 120 QDCGNQAKKD CEHMRCRTCC KSRGFQCQTH VKSTWVPAAK RRERQQQLTT LQQQQEEQQQ 180 QQQQQQTLQL HRDNNPKRQR EDPSASSLVC TRILPSSTSG LEVGNFPAKV NSNAVFHCVR 240 MSSVDDADDQ FAYQTAVNIG GHVFKGILYD QGPENQYMAA GESSSAGGSA SHHHNLIGAA 300 GTATSAATTS ASGGGAAAAP EASPYLEPSL YPAPINTFMA GTQFFPPPRS

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MAGFFSLGGG AASSSQAQDQ QHQQSTNNPP TEISPESWFL YRNDQELPTY RGFELWQTSN  60
SQPQIRHPIN PLQDLYPTAA VGLGVGPSRS GFTMTPARPD HDPSSGGLVM MRSGGGGISC  120
QDCGNQAKKD CEHMRCRTCC KSRGFQCQTH VKSTWVPAAK RRERQQQLTT LQQQQEEQQQ  180
QQQQQQTLQL HRDNNPKRQR EDPSASSLVC TRILPSSTSG LEVGNFPAKV NSNAVFHCVR  240
MSSVDDADDQ FAYQTAVNIG GHVFKGILYD QGPENQYMAA GESSSAGGSA SHHHNLIGAA  300
GTATSAATTS ASGGGAAAAP EASPYLEPSL YPAPINTFMA GTQFFPPPRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-69	SRS family protein

Link Out ? help Back to Top
Ensembl	OIT04472