PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT04447
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 300aa    MW: 32902.3 Da    PI: 9.9605
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT04447genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-10556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ ++ ++G+g W+tI +          R+  ++k++w++ 
         OIT04447  5 KQKWTSEEEAALKAGILKHGPGKWRTILKDPEfsgvlCLRSNVDLKDKWRNM 56
                     79***********************************66***********95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MGAPKQKWTS EEEAALKAGI LKHGPGKWRT ILKDPEFSGV LCLRSNVDLK DKWRNMTVMA  60
NGWSSREQAR LAVKRTKQAP RQDGSPVADT TTAESDEEAA EAQAATTSSG SPQIHGSRKS  120
MIRLDNLIME AISSLKEPGG SNKTTIAAYI EDQYWAPPNF IRLLSGKLKY LTATGKLIKI  180
KRKYRVAPTS TPSDRRRNLS SPFLDSRQRI FSKVDRDYMD MLSTSQIDLE IANKMRNMTP  240
QEAAAAAAQA VAEAEAAIAE AEEAARDAEA HEADAEAAKA FSDATKTLHG RSAPRMIIRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.19e-90MYB_related family protein