PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04193

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRF

Protein Properties

Length: 395aa MW: 43255.8 Da PI: 8.2308

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04193	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.8	2.4e-25	160	203	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e OIT04193 160 DPEPGRCRRTDGKKWRCSRDVVSGHKYCERHVHRGRNRSRKPVE 203 79***************************************987 PP
2	QLQ	44.8	3.8e-16	87	122	1	36
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+F+ aQ+q+L+ Q+l+y++++a++PvP eLl ++ OIT04193 87 SYFSLAQWQELEVQALIYRHMLAGAPVPLELLHLVK 122 79*****************************97776 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MDFNLKQWKN QQQQQQNESE EEIQTPSAKL PRLVLDLDSS YSHSASDFSA SDSALPLFVS 60 EPTKLSAYPL SSDSTSTPTK FTRMGSSYFS LAQWQELEVQ ALIYRHMLAG APVPLELLHL 120 VKKSLINSSP YNYLPQSFQQ YHHYQQALVQ SGYWGRTGMD PEPGRCRRTD GKKWRCSRDV 180 VSGHKYCERH VHRGRNRSRK PVEIPTTAAP SGGVNTASNG GNEVLKVNAG GHASAPHFTL 240 SGTSPSIDVL HLNQRPSECI NEKKGLLEAQ NDVTGDGKSS GQILRCFFDD WPRQLQEGDN 300 GRNNGSSVAS ATNLSISMPG NPSSDFSLKL STGDRHNSGA RVSNVERSTW ETNQVASMGG 360 PLAEALRSST SNSSPTSVLH QLPRGSTSEA SYVST

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MDFNLKQWKN QQQQQQNESE EEIQTPSAKL PRLVLDLDSS YSHSASDFSA SDSALPLFVS  60
EPTKLSAYPL SSDSTSTPTK FTRMGSSYFS LAQWQELEVQ ALIYRHMLAG APVPLELLHL  120
VKKSLINSSP YNYLPQSFQQ YHHYQQALVQ SGYWGRTGMD PEPGRCRRTD GKKWRCSRDV  180
VSGHKYCERH VHRGRNRSRK PVEIPTTAAP SGGVNTASNG GNEVLKVNAG GHASAPHFTL  240
SGTSPSIDVL HLNQRPSECI NEKKGLLEAQ NDVTGDGKSS GQILRCFFDD WPRQLQEGDN  300
GRNNGSSVAS ATNLSISMPG NPSSDFSLKL STGDRHNSGA RVSNVERSTW ETNQVASMGG  360
PLAEALRSST SNSSPTSVLH QLPRGSTSEA SYVST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	2e-74	GRF family protein

Link Out ? help Back to Top
Ensembl	OIT04193