PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04014

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 355aa MW: 38336.2 Da PI: 8.418

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04014	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	225	1.4e-69	124	282	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsalsstklssae 95 +g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++ +++++ +++ +++ +s+l++t+l++ + OIT04014 124 VGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQHNQQQqqtqqlclRADSNIIPKRPRENPSSSLACTRLPTIS 224 6899**************************************************999888777677777774444444455567899******99 PP DUF702 96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 s+ ++P+evss+avfrcv+vs++dd+e+++aY+tav+igGh+fkGiLydqG+e OIT04014 225 SSGLELGGQFPAEVSSQAVFRCVKVSAIDDAEDQFAYHTAVNIGGHLFKGILYDQGPE 282 998888899*********************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MSGFFTLGGG GGGGGGNKEQ QQQEQDQLAT NSFLLFKNEE IYNKGFELWQ QYYQLHQQRA 60 QTPQHQVQEM DFSVGVGPSN NRRIISGSSS SSGNNNIVGD DNKHNYSNSF RVMRPTGGSS 120 SGGVGGMNCQ DCGNQAKKDC PHLRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQQQLAAL 180 QQQHNQQQQQ TQQLCLRADS NIIPKRPREN PSSSLACTRL PTISSSGLEL GGQFPAEVSS 240 QAVFRCVKVS AIDDAEDQFA YHTAVNIGGH LFKGILYDQG PEGRYSGGGG GGESSSGSGA 300 AQQALNFITG ATTSTTATAA TSHQQQHGTM FDPSVFPTPI NAFMAGTQFF PQPRP

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MSGFFTLGGG GGGGGGNKEQ QQQEQDQLAT NSFLLFKNEE IYNKGFELWQ QYYQLHQQRA  60
QTPQHQVQEM DFSVGVGPSN NRRIISGSSS SSGNNNIVGD DNKHNYSNSF RVMRPTGGSS  120
SGGVGGMNCQ DCGNQAKKDC PHLRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQQQLAAL  180
QQQHNQQQQQ TQQLCLRADS NIIPKRPREN PSSSLACTRL PTISSSGLEL GGQFPAEVSS  240
QAVFRCVKVS AIDDAEDQFA YHTAVNIGGH LFKGILYDQG PEGRYSGGGG GGESSSGSGA  300
AQQALNFITG ATTSTTATAA TSHQQQHGTM FDPSVFPTPI NAFMAGTQFF PQPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-58	SRS family protein

Link Out ? help Back to Top
Ensembl	OIT04014