PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT03865 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 20866.8 Da PI: 4.7582 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.6 | 4.5e-43 | 33 | 131 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+aela+++ OIT03865 33 PCAACKILRRRCVDKCVLAPYFPPTEPLKFTIAHRVFGASNIIKMLQELPEDQRADAVNSMVYEANARIRDPVYGCAGAICQLQKQISELQAELAKAQV 131 7**********************************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence |
MECSDKTSGT SSSSSAGMMT PPPSPPWPVI LTPCAACKIL RRRCVDKCVL APYFPPTEPL 60 KFTIAHRVFG ASNIIKMLQE LPEDQRADAV NSMVYEANAR IRDPVYGCAG AICQLQKQIS 120 ELQAELAKAQ VEMLNVQCQN TNLVSLICRE MSQNQENNGS VCPDQQTYGN TSLFLDDNSV 180 YASWEPLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-74 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT03865 |