PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03447
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 425aa    MW: 46569.8 Da    PI: 4.8463
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03447genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.49.3e-06344439
  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
              ++C++++  +   +C++++  lC +C ++ H+       H++
  OIT03447  3 PVCELCGVVRGVVYCKSDSARLCLQCDENVHSAnslsrrHSR 44
              78*****999*********************65667777776 PP
2zf-B_box19.52.1e-064585339
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedCllee..Hkg..Htv 39
                +C++++++++   C d + +lCe+C  +e    g  H++
  OIT03447 45 SLICDKCSSQPAVVRCMDEEICLCESCDWNEngCTGtgHRL 85
              679************************97766654455665 PP
3CCT62.11.7e-21369412144
       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
               R +a++RY+eK+k+R F K+irYesRKa+A++R RvKGrFvk+ 
  OIT03447 369 RHEAKMRYNEKKKSRTFGKQIRYESRKARADTRRRVKGRFVKAG 412
               899**************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MDPVCELCGV VRGVVYCKSD SARLCLQCDE NVHSANSLSR RHSRSLICDK CSSQPAVVRC  60
MDEEICLCES CDWNENGCTG TGHRLKQLNP YNGCLSPTEF TRMLSEVLEI PVSNDTNFGS  120
FSTPCSSLSI NENSSLETKG NGGSLVADKL NELASNYKFD SWAIPSNLSY LTSYNRDPVP  180
VSEGSGLSKQ DCPIKDLGFQ EGDDLSKGVN FDDVTLSFDC GNYELLGSSQ QSHPIYSSED  240
KELDCLVMEK NSSVTGSNSH VETSLEATSS GPQEYMGLQA SQMAAGASST NLFQTMSATA  300
NCMLMNPSCN GSIGLPFLPA PIHSSMSLSL SNITGESSAT TDYQDCGLSP VFLNGEPWDL  360
NLEKSPQKRH EAKMRYNEKK KSRTFGKQIR YESRKARADT RRRVKGRFVK AGEAYDYDPS  420
ETKEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.15e-99CO-like family protein