PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03382
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 293aa    MW: 30708.9 Da    PI: 9.7273
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03382genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063659225
              -S---SGGGGTS--TTTTT-SS-S CS
   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
              k ++C  f+ t  C++G++C+F H
  OIT03382 36 KSKPCTKFFSTAGCPFGESCHFLH 59
              7789******************** PP
2zf-CCCH25.32.6e-0897121226
               -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
               kt+lC+ f     Ck+Gd+C+FaHg
  OIT03382  97 KTKLCNKFNSAEGCKFGDKCHFAHG 121
               89**********************9 PP
3zf-CCCH37.44.4e-12260284126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               ykt+lC +fa+ G C +G+rC+FaHg
  OIT03382 260 YKTKLCENFAK-GSCTFGERCHFAHG 284
               9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MDLRKRNRNE GGFNANGGFK KAKSEMDSLS SGIGSKSKPC TKFFSTAGCP FGESCHFLHY  60
VPGGYNAVAQ MMNMAPSPAS RNAAAPPMPN GNTPAVKTKL CNKFNSAEGC KFGDKCHFAH  120
GDWEIGKPIV PSQEDPRAMG GGPIPGRFGG RMEPPISGPA ASFGTSATAK ISVDASLAGA  180
IIGKGGVNSK QICRQTGAKL AIREHETDKN LRNIELEGTF EQISQASAMV RELISSLGSV  240
GGPGRAPAVQ GGPPPQMSNY KTKLCENFAK GSCTFGERCH FAHGAAELRK TGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-65C3H family protein