PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03129

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRF

Protein Properties

Length: 371aa MW: 40659.1 Da PI: 9.2135

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03129	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	81	1e-25	140	183	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgrsrsrk++e OIT03129 140 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRSRSRKPVE 183 79***************************************987 PP
2	QLQ	45.5	2.3e-16	70	105	1	36
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+F+ Q+q+L+ Q+l+y++++a++PvPpeLl ++ OIT03129 70 SYFSLGQWQELELQALIYRHFIAGAPVPPELLHLVK 105 789****************************98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MDFNLKQWRN QQHESEEQET PTSSAKIPRL HLDFDSASDS ALPLFVSEPT TKLSDSTTTT 60 PTKFPRMGSS YFSLGQWQEL ELQALIYRHF IAGAPVPPEL LHLVKKSIIT SYYSSHPMQQ 120 YPHYQQALMQ SGYWGRAAMD PEPGRCRRTD GKKWRCSRDV VAGQKYCERH VHRGRSRSRK 180 PVEIPTPAIN GGKLNTSTTV SHQNLAKMAG HSAAAATHFS LSGPSSSIDT LHLNQRPTES 240 KKGPLEAQKD ISADGKSSGQ ILRQFFDDWP SQLQEGDNVG SNSRSVVSAT SLSISMPGNP 300 SSDFSLKLST GGDGYNSDAQ VGNVQRSTWR TSMGGGPLAE ALRSSTTNSS PTSVLYELSR 360 GSTSEASYIS T

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MDFNLKQWRN QQHESEEQET PTSSAKIPRL HLDFDSASDS ALPLFVSEPT TKLSDSTTTT  60
PTKFPRMGSS YFSLGQWQEL ELQALIYRHF IAGAPVPPEL LHLVKKSIIT SYYSSHPMQQ  120
YPHYQQALMQ SGYWGRAAMD PEPGRCRRTD GKKWRCSRDV VAGQKYCERH VHRGRSRSRK  180
PVEIPTPAIN GGKLNTSTTV SHQNLAKMAG HSAAAATHFS LSGPSSSIDT LHLNQRPTES  240
KKGPLEAQKD ISADGKSSGQ ILRQFFDDWP SQLQEGDNVG SNSRSVVSAT SLSISMPGNP  300
SSDFSLKLST GGDGYNSDAQ VGNVQRSTWR TSMGGGPLAE ALRSSTTNSS PTSVLYELSR  360
GSTSEASYIS T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-76	GRF family protein

Link Out ? help Back to Top
Ensembl	OIT03129