PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03126

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 478aa MW: 53139.6 Da PI: 6.3947

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03126	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.7	1.6e-14	197	256	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g OIT03126 197 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 256 57*****************666664478446******99***********98 PP
2	AP2	49.9	7.8e-16	299	350	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g OIT03126 299 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 350 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MAPDNNNWLS FSLSSMEMLN SSSSQSSNML QSADSNHYYF ADNNFFPHGW TNSKSQVMYS 60 EGEKQTINDD SLIFYSQIHN QQPPPKLEDF LGGETTETQD SSLTHMYDHG GSAAGAGYFN 120 GGFQTFSANS GSEVDDSQVM GTEFTTESSN ELGYSQCPTG ALSLAVNTTT TTSEKAIVAV 180 DSESCKKITD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR QVYLGGYDKE 240 DKAARAYDLA ALKYWGPTAT TNFPVSNYNK ELVDMKNMTK QEFIASLRRK SSGFSRGASI 300 YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG VNAVTNFEMN 360 RYDVEAIMKS ALPIGGAAKR LKISLESEQK PSLNNNYQHQ TQCSSSINFG PINPVSAIPC 420 GVPYDANQPF YHHSFFPHLQ YSNNDGPSDT SGTMTNMIAA MPLLQSPAEI FIWPHQSY

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MAPDNNNWLS FSLSSMEMLN SSSSQSSNML QSADSNHYYF ADNNFFPHGW TNSKSQVMYS  60
EGEKQTINDD SLIFYSQIHN QQPPPKLEDF LGGETTETQD SSLTHMYDHG GSAAGAGYFN  120
GGFQTFSANS GSEVDDSQVM GTEFTTESSN ELGYSQCPTG ALSLAVNTTT TTSEKAIVAV  180
DSESCKKITD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR QVYLGGYDKE  240
DKAARAYDLA ALKYWGPTAT TNFPVSNYNK ELVDMKNMTK QEFIASLRRK SSGFSRGASI  300
YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG VNAVTNFEMN  360
RYDVEAIMKS ALPIGGAAKR LKISLESEQK PSLNNNYQHQ TQCSSSINFG PINPVSAIPC  420
GVPYDANQPF YHHSFFPHLQ YSNNDGPSDT SGTMTNMIAA MPLLQSPAEI FIWPHQSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.1	1e-158	AP2 family protein

Link Out ? help Back to Top
Ensembl	OIT03126