PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03110

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GeBP

Protein Properties

Length: 396aa MW: 43880.2 Da PI: 5.9606

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03110	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	75.7	8.1e-24	44	136	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +f+r+w+e Dei +LqGl+d g+ + d++ fy +++ + ++ksql+eK+rrL+kKf+ +++ ++g ++s+ ++hd+ ++ls+++W+ OIT03110 44 KFHRIWTEPDEIRFLQGLLDD----GSLLFPrDLNIFYTRFSNTMLQPYTKSQLSEKLRRLRKKFRVISSRLSKGLDMSLLSPHDRALYDLSRQLWH 136 699***************8....7766666**************************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MDSTLPLSQS PTDTASKLPI KRKTTDDPFI TAAGSDPQKL PPFKFHRIWT EPDEIRFLQG 60 LLDDGSLLFP RDLNIFYTRF SNTMLQPYTK SQLSEKLRRL RKKFRVISSR LSKGLDMSLL 120 SPHDRALYDL SRQLWHPDFA HTSPFNADKS KKSNLVGVKV SFLPTIPSAP GLGQGLDQYD 180 TGPGQGSFLP TTPYVTVPGP SRVSDQNGTS SGQDRNENGT IPYQDKLSMD TDPLSVGNGN 240 RITGKDPTHD GVSLSKENVT GKDPTHDGVS VSKENVEVGQ VNNYKNDKLG EFCDGDGKLS 300 EVNVEFEGGD VGYKRVGCSC LDGPVQVGVG CSIGEIAAKV VMDVFDECLK DYKNGDLLKE 360 ENLDKFEERW REQRVAELDV LARRLRLVLE HSLQSQ

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MDSTLPLSQS PTDTASKLPI KRKTTDDPFI TAAGSDPQKL PPFKFHRIWT EPDEIRFLQG  60
LLDDGSLLFP RDLNIFYTRF SNTMLQPYTK SQLSEKLRRL RKKFRVISSR LSKGLDMSLL  120
SPHDRALYDL SRQLWHPDFA HTSPFNADKS KKSNLVGVKV SFLPTIPSAP GLGQGLDQYD  180
TGPGQGSFLP TTPYVTVPGP SRVSDQNGTS SGQDRNENGT IPYQDKLSMD TDPLSVGNGN  240
RITGKDPTHD GVSLSKENVT GKDPTHDGVS VSKENVEVGQ VNNYKNDKLG EFCDGDGKLS  300
EVNVEFEGGD VGYKRVGCSC LDGPVQVGVG CSIGEIAAKV VMDVFDECLK DYKNGDLLKE  360
ENLDKFEERW REQRVAELDV LARRLRLVLE HSLQSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-19	GeBP family protein

Link Out ? help Back to Top
Ensembl	OIT03110