PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03032
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 267aa    MW: 29679.8 Da    PI: 9.745
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03032genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.3e-13100144347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG+g+W+ I+r++  +Rt+ q+ s+ qky
         OIT03032 100 PWTEEEHRKFLIGLEKLGKGDWRGISRKFVITRTPTQVASHAQKY 144
                      8*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MERKCSHCGN TGHNSRTCST LKCASNGSFI GGLRLFGVQL DISNASSSSS PIHLKKSLSL  60
DCLSPSLSVN ESCEKSTSIN NGYLSDGLIV RVEERKKGVP WTEEEHRKFL IGLEKLGKGD  120
WRGISRKFVI TRTPTQVASH AQKYFLRQSS LNKKKRRSSL FDMAKSNNKM HVGAITMKFK  180
HADYFGNCLD KTILTKKDCQ EIRASLLDLN SFGEDMPIAK DNQRSEYPQQ PEEIYSVPNK  240
SISSFGALDL ELSLSAPRNN IGPITVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KKKRR
2153180KKKRRSSLFDMAKSNNKMHVGAITMKFK
3154181KKKRRSSLFDMAKSNNKMHVGAITMKFK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-45MYB_related family protein