PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03028
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 362aa    MW: 40498.6 Da    PI: 4.4929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03028genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-1981131155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
               ++y+GVr++  +g+WvAeIr+p     +   r +lg+f ta eAa a+++a+++++g
  OIT03028  81 CKYRGVRQRT-WGKWVAEIREP-----HrgSRLWLGTFETAIEAALAYDEAARAMYG 131
               79*****999.**********6.....337************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MAILDQASNM MSLPLDYTRK RKSRSRKDAP KNVAETLAKW KEVNEKLESS DDGKKPVRKV  60
PAKGSKKGCM KGKGGPENGR CKYRGVRQRT WGKWVAEIRE PHRGSRLWLG TFETAIEAAL  120
AYDEAARAMY GTCARLNLPN YPSSNESNKD DSSLPTMSQS DSTTASSLTE TNIPKIKFED  180
LECESRSDGA RSAFYEAGTP SSSVKEEAKD EAKGELGNRE IVETKEEPVA FDYDSVKSGQ  240
DNNLDNLCFD DEMFDVDELL GVLDSTPLDA SAPNQVSGSV PVNQDQYVYD PSYRLQSAAY  300
DNNQFSNLSY QLQNTDGKTL DDSQQMQQQA PIVDDYNFDF LKPGRPEDFN FSLDDLSFFD  360
FQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11823TRKRKS
22128RKSRSRKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.12e-45ERF family protein