PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03014

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 697aa MW: 75880.5 Da PI: 7.4961

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03014	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	261	281	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + G C Gd+C +aHg OIT03014 261 PCPEFKK-GACAKGDSCEYAHG 281 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MCSGSKSKVC PFDLNMDKKD GVSKNCSKLL ELSASDDLAG FICEVEKGCG VDELSFWYGR 60 KFGSKKMGFE ERTPLMIASM YGSIEILRFI IGTGKVDVNR ACGSDGVTAL HCAAAGGSES 120 SIEVVKILVD ASADVNACDS SGNRPCDVFA SYPKCLRNSK RKSLELLLNG SLAELAELEE 180 EGKAVIQTTK EGSEKKEYPI DTSLPDINDG IYGSDDFRMY CFKVKPCSRA YSHDWTECPF 240 VHPGENARRR DPRKYNYTCV PCPEFKKGAC AKGDSCEYAH GVFESWLHPA QYRTRLCKDE 300 TGCSRKVCFF AHKHEELRPL YASTGSAIPS PKATPVSSMD ISTLSPLALG SSSMMLPTST 360 TSTPPMSPAA TCSSPIGGNM WQGKVNLTPP ALQLPGSRLK TSLNARDLDL DMEMLGLESI 420 RTQQQLRQQL IDEMAGLSSP SYWKNDNRMG DMKPTNLDDV FGSMDSQLLS QLQGLSPRMT 480 SNTSSQLYSP SVSHMQGLSP KVANNTSQLQ SPTGLQMRQN MNQFQASYSN MSQSSSPLRK 540 PSTYGFDSSA AVAAAVMNSR SAAFAKQRSQ SFIDRSGIGH RSGPNGVANS PPLMPSNMSD 600 WGSPTGKLEW GFNSEDTNKL KRSQSFGFRG GNAAPTRSPI APSQVNEPDV SWVHSLVKDV 660 SSTGTGLYSS EQKRGSVHDT IPPWLEQMYI DQERIAA

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MCSGSKSKVC PFDLNMDKKD GVSKNCSKLL ELSASDDLAG FICEVEKGCG VDELSFWYGR  60
KFGSKKMGFE ERTPLMIASM YGSIEILRFI IGTGKVDVNR ACGSDGVTAL HCAAAGGSES  120
SIEVVKILVD ASADVNACDS SGNRPCDVFA SYPKCLRNSK RKSLELLLNG SLAELAELEE  180
EGKAVIQTTK EGSEKKEYPI DTSLPDINDG IYGSDDFRMY CFKVKPCSRA YSHDWTECPF  240
VHPGENARRR DPRKYNYTCV PCPEFKKGAC AKGDSCEYAH GVFESWLHPA QYRTRLCKDE  300
TGCSRKVCFF AHKHEELRPL YASTGSAIPS PKATPVSSMD ISTLSPLALG SSSMMLPTST  360
TSTPPMSPAA TCSSPIGGNM WQGKVNLTPP ALQLPGSRLK TSLNARDLDL DMEMLGLESI  420
RTQQQLRQQL IDEMAGLSSP SYWKNDNRMG DMKPTNLDDV FGSMDSQLLS QLQGLSPRMT  480
SNTSSQLYSP SVSHMQGLSP KVANNTSQLQ SPTGLQMRQN MNQFQASYSN MSQSSSPLRK  540
PSTYGFDSSA AVAAAVMNSR SAAFAKQRSQ SFIDRSGIGH RSGPNGVANS PPLMPSNMSD  600
WGSPTGKLEW GFNSEDTNKL KRSQSFGFRG GNAAPTRSPI APSQVNEPDV SWVHSLVKDV  660
SSTGTGLYSS EQKRGSVHDT IPPWLEQMYI DQERIAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT03014