PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT02960
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 742aa    MW: 83948.1 Da    PI: 6.3874
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT02960genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS383.32.8e-1173697391374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lL+ cA+av++++ + a++lL+++++ +sp gd mqRla yf+ +L+ar+a+s++++y+al + + s    +++l+ ++l+  ++P+ k+s +  N+ 
  OIT02960 369 LRTLLTLCAQAVAAENRRTANELLKQIRQSCSPMGDGMQRLAYYFADGLEARMAGSGTHIYRALITLPVS---AADVLKGYQLLLAACPFRKISIFFSNKS 466
               5789************************************************************999999...99************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I++ +e++++vHiiD++i+ G+QWpaL+q L+sRp+gpp+lRiTg++ p++g   + ++eetg+rLa++Ae+++vpfefn+ +a+++e++++++L++++gE
  OIT02960 467 IMNLAENASTVHIIDIGIMWGFQWPALIQRLSSRPGGPPKLRITGIDFPHPGfrPAVRVEETGRRLANYAESFNVPFEFNA-IAQKWETIKVKDLKINKGE 566
               **************************************************9999***************************.7****************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               +l+Vn+ ++  +llde+v+ +s+rd vL+l+++l+P+v+++   +  +n++ F +rf eal +ys+lfd+lea++pre +er+ +E+ +lgre++nv+ace
  OIT02960 567 VLVVNCLYRFRNLLDETVDANSPRDVVLNLIRKLNPDVFILGIVNGAYNAPFFITRFREALFHYSSLFDMLEANIPREVHERMLIEKNILGREAMNVIACE 667
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                aer+er et+++W+ r+++aGF+++pl+e+++  a    ++++++ + ++ +s++l++gWk+r  +++S W+
  OIT02960 668 AAERIERPETYKQWQVRIMKAGFQQLPLDEEIMRMATERFKEYDNN-FVIDVDSEWLLQGWKGRIGYALSTWK 739
               ********************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    
MKFDRGFMGL YEAGSAIKIE DEAHSFLPDP NLINNLRVSD NLVNNNHVDI SPFQSNTLVP  60
STADEDYDFS DVVLKYINQM LMEEDIEEMS SMFQESAALR AAERSYYEVI GEEYPPPPNL  120
DKPSNLGQNG YNSMDRSGFH NSGNDGRDGV LCPNWNLDLS GDDVSNVSRF LSPHSSSSTV  180
TDVRVDSPLS TLRIPDIFSD SESIMQFKKG VEEASKFIPR GNSLFADVRY NFVGGEQNEE  240
RIDALVKVEK YGEKQSPERS RGKKNTLQED VVDSMEERNN KQYAVFSEST VRSEMFDRVL  300
LCNAGKNESA LRESWQTISR RNVLQNGVSK GSNGKKSQGK KQGSKRDVVE LSKNSQAKKQ  360
GGKRHVVDLR TLLTLCAQAV AAENRRTANE LLKQIRQSCS PMGDGMQRLA YYFADGLEAR  420
MAGSGTHIYR ALITLPVSAA DVLKGYQLLL AACPFRKISI FFSNKSIMNL AENASTVHII  480
DIGIMWGFQW PALIQRLSSR PGGPPKLRIT GIDFPHPGFR PAVRVEETGR RLANYAESFN  540
VPFEFNAIAQ KWETIKVKDL KINKGEVLVV NCLYRFRNLL DETVDANSPR DVVLNLIRKL  600
NPDVFILGIV NGAYNAPFFI TRFREALFHY SSLFDMLEAN IPREVHERML IEKNILGREA  660
MNVIACEAAE RIERPETYKQ WQVRIMKAGF QQLPLDEEIM RMATERFKEY DNNFVIDVDS  720
EWLLQGWKGR IGYALSTWKA TC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein