PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT02816 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 84aa MW: 9485.73 Da PI: 8.4823 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 104.3 | 1e-32 | 14 | 84 | 1 | 71 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearard 71 +CaaCk+lrrkC+++ v+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rd OIT02816 14 PCAACKFLRRKCQPEYVFAPYFPPDQPQKFANVHKIFGASNVTKLLNELQPHQREDAVNSLAYEADMRLRD 84 7*******************************************************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence |
MASSSSSSLS SYSPCAACKF LRRKCQPEYV FAPYFPPDQP QKFANVHKIF GASNVTKLLN 60 ELQPHQREDA VNSLAYEADM RLRD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 2e-46 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT02816 |