PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT02680

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 154aa MW: 17404.8 Da PI: 7.8189

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT02680	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.3	2.5e-38	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk lrr+C++dC++ pyfp ++p++f +vhk++Gasnv k+l++++e++r d+++sl+yeA +r+++PvyG+vg i+ l+q++ +l+ +la++++e OIT02680 5 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSFVHKIYGASNVGKMLQQVEEHQRADVAHSLYYEAYCRTKNPVYGCVGNISILHQEIYHLEWQLAKVEAE 104 6***********************************************************************************9999999999998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence
MTSTRCAACK QLRRRCPSDC IFLPYFPPNN PQRFSFVHKI YGASNVGKML QQVEEHQRAD 60 VAHSLYYEAY CRTKNPVYGC VGNISILHQE IYHLEWQLAK VEAEISLLKA QAQTEAQLAQ 120 GQQVELSPAN MLADKNGVYS SLLSSFDLST PSLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	9e-46	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT02680