PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT02665

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 344aa MW: 38422.2 Da PI: 5.8394

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT02665	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.7e-12	130	181	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +r+l+P++ + ++ + a+i A++++k+L+ OIT02665 130 QRMTHIAVERNRRKQMNEYLAVIRSLMPPS---YVQRGDQASIIGGAINFVKELE 181 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MALETVIYPQ ESFGYGCKEY YIPANLSNYN YELGLLQGGE DMTFTSLLDT GNYNTNRESS 60 SSPVMYNINN AKEYSWDPNY SSLEEPLNVI GEGSPAMMEP PPAARAATVS GRRKRRRTRS 120 CKNKEELENQ RMTHIAVERN RRKQMNEYLA VIRSLMPPSY VQRGDQASII GGAINFVKEL 180 EHHLQTLEAQ TITHSQQQQQ QSDCHGLSST PLFADYFSFP QYSTRSNHSN SSTPADAAAA 240 TTCDSPLAVE KQLALAEIEA TMAESHANLK ILSKRRPKQL LKMVAGLQCL WLTVLHLNVT 300 TVDHMVLYSL SLKLEEGCQL TTADEIADAV NQLLCRIQEE AASS

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MALETVIYPQ ESFGYGCKEY YIPANLSNYN YELGLLQGGE DMTFTSLLDT GNYNTNRESS  60
SSPVMYNINN AKEYSWDPNY SSLEEPLNVI GEGSPAMMEP PPAARAATVS GRRKRRRTRS  120
CKNKEELENQ RMTHIAVERN RRKQMNEYLA VIRSLMPPSY VQRGDQASII GGAINFVKEL  180
EHHLQTLEAQ TITHSQQQQQ QSDCHGLSST PLFADYFSFP QYSTRSNHSN SSTPADAAAA  240
TTCDSPLAVE KQLALAEIEA TMAESHANLK ILSKRRPKQL LKMVAGLQCL WLTVLHLNVT  300
TVDHMVLYSL SLKLEEGCQL TTADEIADAV NQLLCRIQEE AASS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	117	RKRRR
2	113	118	RKRRRT
3	131	142	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-88	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT02665