PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT02547
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 329aa    MW: 37317 Da    PI: 9.5311
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT02547genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.18.8e-0877110137
       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfg 37 
               s+++GV+ ++ +grW+A+I   +   g +k+ +lg++ 
  OIT02547  77 SRFRGVSKHHHNGRWEARIGRvF---G-NKYLYLGTYS 110
               789***************99966...3.6*******95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MDLNTSVKSE MASPGKRSIS MVDYDISETT KRVKRRRRSP PAIELNENIG QQGEKQKMDS  60
SKVDQNIAHT PTVKRSSRFR GVSKHHHNGR WEARIGRVFG NKYLYLGTYS KYFHPIILST  120
DQIKTVKTGC QLESCVCFSV GTQEEAARAY DIAAIEYRGI NAVTNFDLST YIRWLKPGAN  180
SQMSFQDIRS ENQAIQMNTN DMINPINDPK FPFSSNYFTT TRETLPPIPQ SQEPIERKMP  240
LSPCNKSSSP TALSLLLRSS MYRELVEKNS TTTASEKDEP NMKNKEQSNT EDGFVFYTSH  300
KLPPLESLEK GTSSRPCDRA GQSFWNAMP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.26e-24ERF family protein