PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT02350

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 493aa MW: 52891.6 Da PI: 5.0063

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT02350	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.3	1.1e-15	98	142	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++++ ++G+g+Wk+I+r+ + Rt+ q+ s+ qk+ OIT02350 98 AWTEEEHKLFLKGLDKYGKGDWKSISRHCVLSRTPQQVASHAQKF 142 7******************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MSTDRTCNGS FWTKEEDKIF ENTLAVYSSD DDLLMMMAAA LPGKSLEDIK NHYEVLVEDV 60 NAIESGLVPL PRYRNMQSHS RNKSRLPKAD VERRKGVAWT EEEHKLFLKG LDKYGKGDWK 120 SISRHCVLSR TPQQVASHAQ KFFNRREGVN KERRRASIHD ITSVDTETAG TSQVPNPENM 180 IGPAGGGSQV TASTNDMTGA VDSRVVSTGV GTFTSPVAAI ENKSVLPQEI TIAEPVIAVS 240 GGESSGPGAA FVNEVNRLYH NVNDDFILGI DELIMEQEGT YEAGIQVDTD RSLLPSQQPS 300 TAAGNEMYCH PVTRIGSELE ALITEHMVED NEISSIFDVG KTPSSHAMLS STAHSGMSSY 360 TVAAHSGMSS YTVAAHSGMS SYTVDARSGM SSYTVAAHSG MSSYTVDAHS GMSSYTVNAH 420 SGMSSYTVGS FGSNNAPENR VAAPGGGLTI DSQQLPSIAP SSNFGVGVCP NSNTSVRDEG 480 IFYLGDLFTD HMI

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MSTDRTCNGS FWTKEEDKIF ENTLAVYSSD DDLLMMMAAA LPGKSLEDIK NHYEVLVEDV  60
NAIESGLVPL PRYRNMQSHS RNKSRLPKAD VERRKGVAWT EEEHKLFLKG LDKYGKGDWK  120
SISRHCVLSR TPQQVASHAQ KFFNRREGVN KERRRASIHD ITSVDTETAG TSQVPNPENM  180
IGPAGGGSQV TASTNDMTGA VDSRVVSTGV GTFTSPVAAI ENKSVLPQEI TIAEPVIAVS  240
GGESSGPGAA FVNEVNRLYH NVNDDFILGI DELIMEQEGT YEAGIQVDTD RSLLPSQQPS  300
TAAGNEMYCH PVTRIGSELE ALITEHMVED NEISSIFDVG KTPSSHAMLS STAHSGMSSY  360
TVAAHSGMSS YTVAAHSGMS SYTVDARSGM SSYTVAAHSG MSSYTVDAHS GMSSYTVNAH  420
SGMSSYTVGS FGSNNAPENR VAAPGGGLTI DSQQLPSIAP SSNFGVGVCP NSNTSVRDEG  480
IFYLGDLFTD HMI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-55	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT02350