PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT02328

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ARF

Protein Properties

Length: 634aa MW: 70256 Da PI: 6.9236

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT02328	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.4	2.6e-23	112	212	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g W++++iyr++++r++lt+GW++Fv++++L +gD+vvF + +++ l+v OIT02328 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldftADPPVQ--TVIAKDVHGAIWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVSGDSVVFL--RAENGDLCV 208 89***************************97556555..8********************************************..4488889 PP EEE- CS B3 95 kvfr 98 +++r OIT02328 209 GIRR 212 **98 PP
2	Auxin_resp	110.6	1.6e-36	278	361	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++Fe+vY+Pras++eF+v++++v++a++v+++ GmRfkmafetedss++++ +G ++ v+ +dp+rWp+S+Wr+L+ OIT02328 278 AAYLAASSQPFEIVYYPRASSPEFCVRASSVNAAMNVQWCSGMRFKMAFETEDSSRISWfTGSISLVQVADPIRWPHSPWRLLQ 361 5778999***************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MEEAIERCVD SQLWHACAGS MVQIPPLNSK VFYFPQGHAE HTFTDVDFTA LPRIPAMILC 60 RVDAVKFLAD PETDEIYAKI RLIPVENKDH DFENDTVLGS SVVETTEKPS SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDFTADPPVQ TVIAKDVHGA IWKFRHIYRG TPRRHLLTTG 180 WSSFVNQKKL VSGDSVVFLR AENGDLCVGI RRVKRDGIGG METQSGWNSA AGNYGGFYAF 240 LKEDENNIMR SGSNGNLNSS GGRFRDKGQV SPESVVKAAY LAASSQPFEI VYYPRASSPE 300 FCVRASSVNA AMNVQWCSGM RFKMAFETED SSRISWFTGS ISLVQVADPI RWPHSPWRLL 360 QVTWDEPDLL QNVKKVSPWL VKLVSNMPVI HLSPPRKKLC LPQDFALDSQ FPLPSFWGNP 420 LRSSSPFCCV SDNITAGIQG ARHAQFGVPL LDLQLSKKLQ SGLLPLDADS RIPNKVQKER 480 NENISCLLTM GSSSQKADNL KTPRFLLFGQ PILTEQQMSA ELGMSSGQCK VFLDTEDVGH 540 GLDISVLGSY EELYKRLADM FGIERLDMMT RLLYIDATGA SRQIGDEPFS DLVKTAKRLT 600 ILNNSAARKW LTHLPTAEGC LDSSNQAGSL SIFA

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MEEAIERCVD SQLWHACAGS MVQIPPLNSK VFYFPQGHAE HTFTDVDFTA LPRIPAMILC  60
RVDAVKFLAD PETDEIYAKI RLIPVENKDH DFENDTVLGS SVVETTEKPS SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDFTADPPVQ TVIAKDVHGA IWKFRHIYRG TPRRHLLTTG  180
WSSFVNQKKL VSGDSVVFLR AENGDLCVGI RRVKRDGIGG METQSGWNSA AGNYGGFYAF  240
LKEDENNIMR SGSNGNLNSS GGRFRDKGQV SPESVVKAAY LAASSQPFEI VYYPRASSPE  300
FCVRASSVNA AMNVQWCSGM RFKMAFETED SSRISWFTGS ISLVQVADPI RWPHSPWRLL  360
QVTWDEPDLL QNVKKVSPWL VKLVSNMPVI HLSPPRKKLC LPQDFALDSQ FPLPSFWGNP  420
LRSSSPFCCV SDNITAGIQG ARHAQFGVPL LDLQLSKKLQ SGLLPLDADS RIPNKVQKER  480
NENISCLLTM GSSSQKADNL KTPRFLLFGQ PILTEQQMSA ELGMSSGQCK VFLDTEDVGH  540
GLDISVLGSY EELYKRLADM FGIERLDMMT RLLYIDATGA SRQIGDEPFS DLVKTAKRLT  600
ILNNSAARKW LTHLPTAEGC LDSSNQAGSL SIFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28350.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OIT02328