PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT02046

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ARF

Protein Properties

Length: 664aa MW: 74168.8 Da PI: 6.7597

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT02046	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.5	1.4e-24	129	229	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+kvlt sd++++g +++ +k+a+e+ +++++ +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv++++L +gD++vF + +++el+v+v OIT02046 129 FCKVLTASDTSTHGGFSVLRKHANEClppldMNQQTPTQELIAKDLHGTEWHFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDSFVFL--RGENGELRVGV 227 99**************************9555555679********************************************..449999*** PP E- CS B3 97 fr 98 +r OIT02046 228 RR 229 98 PP
2	Auxin_resp	100.3	2.7e-33	255	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++++k+ +svGmRfkm+fe+e+s+err+sGt+vg++dl++ +W++S WrsLk OIT02046 255 ASHAVTTQTLFVVYYKPRT--SQFIIGLNKYLETVKHGFSVGMRFKMQFEGEESPERRFSGTIVGIEDLSS-QWKDSTWRSLK 334 689*************6..9******************************************777.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence
MENNGCYQSH QQTNFSAKGK DDLYQELWKL CAGPLVDVPK DGERVYYFPQ GHMEQLEASM 60 NQELNLRIPS FNLKPKILCR VIHTQLLAEQ DTDEVYAQIT LMPEAAEQAE PTSQDPCPPE 120 PQRPKVHSFC KVLTASDTST HGGFSVLRKH ANECLPPLDM NQQTPTQELI AKDLHGTEWH 180 FKHIFRGQPR RHLLTTGWST FVSSKRLVAG DSFVFLRGEN GELRVGVRRL ARQQSSMPSS 240 VISSQSMHLG VLATASHAVT TQTLFVVYYK PRTSQFIIGL NKYLETVKHG FSVGMRFKMQ 300 FEGEESPERR FSGTIVGIED LSSQWKDSTW RSLKVQWDEP ASISRPDRVS PWEIEPFVAS 360 VPNPLVPPMA GKNKRHRPHI ETKIPEPASS IASAVWNPSI DSPQFNTTGI NSSTLTSHTD 420 GGCGWRLPHL NTSSMLVDET EDSKSASAWS GFPSILSSQF SKGTNQPILS PTDERKCDTI 480 TTCRLFGIDL KSTLSSTTEA PLPKPANISN VSAERASPNT VPAGDSDQIS GLSIDFKDQK 540 QGQLQLLLKE VQSKHNCSTR SRTKVQMQGV AVGRAVDLTT LKGYNELIKE LEEMFEIQGE 600 LHPRNKWEIV FTDDEGDMML MGDHPWLEFC NVVRRIFIVS SQDIKNWSAG NKLLSCADNG 660 AIAF

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence

MENNGCYQSH QQTNFSAKGK DDLYQELWKL CAGPLVDVPK DGERVYYFPQ GHMEQLEASM  60
NQELNLRIPS FNLKPKILCR VIHTQLLAEQ DTDEVYAQIT LMPEAAEQAE PTSQDPCPPE  120
PQRPKVHSFC KVLTASDTST HGGFSVLRKH ANECLPPLDM NQQTPTQELI AKDLHGTEWH  180
FKHIFRGQPR RHLLTTGWST FVSSKRLVAG DSFVFLRGEN GELRVGVRRL ARQQSSMPSS  240
VISSQSMHLG VLATASHAVT TQTLFVVYYK PRTSQFIIGL NKYLETVKHG FSVGMRFKMQ  300
FEGEESPERR FSGTIVGIED LSSQWKDSTW RSLKVQWDEP ASISRPDRVS PWEIEPFVAS  360
VPNPLVPPMA GKNKRHRPHI ETKIPEPASS IASAVWNPSI DSPQFNTTGI NSSTLTSHTD  420
GGCGWRLPHL NTSSMLVDET EDSKSASAWS GFPSILSSQF SKGTNQPILS PTDERKCDTI  480
TTCRLFGIDL KSTLSSTTEA PLPKPANISN VSAERASPNT VPAGDSDQIS GLSIDFKDQK  540
QGQLQLLLKE VQSKHNCSTR SRTKVQMQGV AVGRAVDLTT LKGYNELIKE LEEMFEIQGE  600
LHPRNKWEIV FTDDEGDMML MGDHPWLEFC NVVRRIFIVS SQDIKNWSAG NKLLSCADNG  660
AIAF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OIT02046