PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT01837

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 482aa MW: 53719.2 Da PI: 4.2305

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT01837	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.7	1.9e-20	70	124	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr++ +g+WvAeIr+ +++ ng kr +lg+f ta eAa a+++a+k ++g+ OIT01837 70 CKYRGVRQRT-WGKWVAEIREpVYNsNG--KRLWLGTFSTAVEAAIAYDEAAKIMYGH 124 79***999.******7777665..*********************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MSSHNFQRRM RRRRNGSASI EETLLMWKNQ KQELNATLDG GIKKKTRNFP AKGSKKGCMR 60 GKGGPENLGC KYRGVRQRTW GKWVAEIREP VYNSNGKRLW LGTFSTAVEA AIAYDEAAKI 120 MYGHNAILNF PDYSVQNSEL ANYSTSVSIA RTTSLGSSES SVEDSRIEPD LQTSDTPGDG 180 VVAITDEKTI LDDPTNLCSD GTADGDSEAQ QDSSVCCLNM ESVVMEVDDS LGDMKGLNCS 240 TRIDSEPILE PTSCCVKVET PSDNDFVQDR RLECVDDPIK VSNSLHILHQ EMTDVKPNDS 300 IFQHHVPNEN YESGDQVLLP CDPIALLDYD CSANALQEQP LDFRSSDNTS ADIRSHLEYA 360 EYLLMEDINT MEATTVSDTF WLNENIGESY NLQSFLDESF DVNNLKNEEL SDYYNYDQQI 420 NLLNSRTNAE VHSSGVISKG GKSNEQCINV PGLEDHGTEV NMEDLYILNS DFDISSILGD 480 IF

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MSSHNFQRRM RRRRNGSASI EETLLMWKNQ KQELNATLDG GIKKKTRNFP AKGSKKGCMR  60
GKGGPENLGC KYRGVRQRTW GKWVAEIREP VYNSNGKRLW LGTFSTAVEA AIAYDEAAKI  120
MYGHNAILNF PDYSVQNSEL ANYSTSVSIA RTTSLGSSES SVEDSRIEPD LQTSDTPGDG  180
VVAITDEKTI LDDPTNLCSD GTADGDSEAQ QDSSVCCLNM ESVVMEVDDS LGDMKGLNCS  240
TRIDSEPILE PTSCCVKVET PSDNDFVQDR RLECVDDPIK VSNSLHILHQ EMTDVKPNDS  300
IFQHHVPNEN YESGDQVLLP CDPIALLDYD CSANALQEQP LDFRSSDNTS ADIRSHLEYA  360
EYLLMEDINT MEATTVSDTF WLNENIGESY NLQSFLDESF DVNNLKNEEL SDYYNYDQQI  420
NLLNSRTNAE VHSSGVISKG GKSNEQCINV PGLEDHGTEV NMEDLYILNS DFDISSILGD  480
IF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	13	RRMRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40350.1	4e-35	ERF family protein

Link Out ? help Back to Top
Ensembl	OIT01837