PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT01712
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20358.9 Da    PI: 7.5068
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT01712genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.25e-141561147
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
              k+ienk  r  tfskRr+g+ KKA+ L   Cda++ +++ s+tgk +
  OIT01712 15 KKIENKDDRFATFSKRRTGLYKKASNLVSQCDADIGIVLSSPTGKPF 61
              68******************************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MVSKKSKGRQ KIAIKKIENK DDRFATFSKR RTGLYKKASN LVSQCDADIG IVLSSPTGKP  60
FSFFHPTTDV VIACFQNPDM QLSETDRLVA AYARNKVNHL NSRLEEFDTR EDAAIAQTRF  120
YDQMSKTRQN DWWESIEQLN VDEMTMFEAW LDNAMFNLNN HLNQLEIGAS SSSPNYF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-28M-type_MADS family protein