PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT01645

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 273aa MW: 30932.4 Da PI: 4.8459

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT01645	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.8	1.6e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+++ ++ G+g +W + +++ g++R++k+c++rw++yl OIT01645 14 RGPWSPEEDNTLKNYLEKNGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	44	5.1e-14	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd l++ + q G++ W+ Ia+ ++ gRt++++k++w++ OIT01645 69 GGFTEEEDNLILTLYGQIGSR-WSVIAANLQ-GRTDNDVKNHWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MGRAPCCDKT KVKRGPWSPE EDNTLKNYLE KNGTGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNLIL TLYGQIGSRW SVIAANLQGR TDNDVKNHWN TKLKKKLLAA 120 ENYTNLSSCC SYNSSDLNHK FSINSFSRNY STMDSNTFTS LVDTNLTNPN LLVPEMLVAE 180 SDQLFPIPSL MEIQENGAIQ LAQDQEDGYV MDFSSGISSS YYYDLVNDFD FQEKFIGVDD 240 PNYSSSFSNY STLVQLQANN IPDIDQTFRG FQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	9e-74	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT01645