PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT01511
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 302aa    MW: 34737.3 Da    PI: 7.7128
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT01511genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.42.7e-1152108155
       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
               s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +  Aa a++ a++k++g
  OIT01511  52 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEVAAAHAYDLAALKYWG 108
               57*******************99998898888888*****89*************98 PP
2AP251.62.3e-16151202155
       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  OIT01511 151 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 202
               89****99**********99966...3.6*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MAKLSQQINQ RNSSNNNSNN ANTNITTTNG SVLKVKRTRK TVPRDSPPQR SSIYRGVTRH  60
RWTGRYEAHL WDKNCWNESQ NKKGRQGAYD DEVAAAHAYD LAALKYWGSE TILNFPLSTY  120
EKEIIEMEGQ SREEYIGSLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL  180
GTYATQEEAA TAYDMAAIEY RGLNAVTNFD LSRYIKWLKP NNNNTIDQPN PNETNMIPTP  240
NHTECPPEPV ELFDPPQSNF PEDIKTYFDT QEFGGHDQGE DMNIFNEINS FMQSLLQFDF  300
NA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.15e-98AP2 family protein