PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT01330

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 533aa MW: 59946.9 Da PI: 8.3537

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT01330	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.2	1e-09	419	466	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+d+v+q+G g+W+ I + +Rt+ ++k++w+++l OIT01330 419 WTVSEVRKLIDGVAQYGVGRWSHIKKLYFsssAHRTAVDLKDKWRNLL 466 *************************999**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
VPTTLSLSLS PLRFPLHFLS LSHTHSTLTL QLTLLLMNQN IAYRSGFASL GVWFDESETR 60 DVHASVSGVL CFDEKRVLKG MERKGVLYNI DSSIAAKRED EINQEVLDLK RSHFEAGNIQ 120 AQNDLSTPCE DYLLDIEFAE SITNLDYGSS RGLLDPILES QIPLSPGLVV QESQSQNAMF 180 GLTNSELHDL SRDKCESQIL VEYNAIKFPT AFTPGDISNV DDVAGFFAEA ASSEKMNDSV 240 IDHSVLTSKG ISFMSNATRN EGQDVNCEIF DMHEFSAISP PVTSQAMNID TPLTQKRLRK 300 PTRRYIDESS DLNATRSRKR EVSTCASASK DKLPRVRCQK KSRAESTEME LFPEESSCRA 360 IQVPFASLVN EECDKRHTSN AIQVMKAHKE VTVVNPKDDP IALKKLDQDG ARRKHHRLWT 420 VSEVRKLIDG VAQYGVGRWS HIKKLYFSSS AHRTAVDLKD KWRNLLKACY LQKQSKITEK 480 GKHNLSWRPL PKSVLHRVSE LANMHPYPRK GRCKSRSPCS SSSPVHTNRS NIQ

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

VPTTLSLSLS PLRFPLHFLS LSHTHSTLTL QLTLLLMNQN IAYRSGFASL GVWFDESETR  60
DVHASVSGVL CFDEKRVLKG MERKGVLYNI DSSIAAKRED EINQEVLDLK RSHFEAGNIQ  120
AQNDLSTPCE DYLLDIEFAE SITNLDYGSS RGLLDPILES QIPLSPGLVV QESQSQNAMF  180
GLTNSELHDL SRDKCESQIL VEYNAIKFPT AFTPGDISNV DDVAGFFAEA ASSEKMNDSV  240
IDHSVLTSKG ISFMSNATRN EGQDVNCEIF DMHEFSAISP PVTSQAMNID TPLTQKRLRK  300
PTRRYIDESS DLNATRSRKR EVSTCASASK DKLPRVRCQK KSRAESTEME LFPEESSCRA  360
IQVPFASLVN EECDKRHTSN AIQVMKAHKE VTVVNPKDDP IALKKLDQDG ARRKHHRLWT  420
VSEVRKLIDG VAQYGVGRWS HIKKLYFSSS AHRTAVDLKD KWRNLLKACY LQKQSKITEK  480
GKHNLSWRPL PKSVLHRVSE LANMHPYPRK GRCKSRSPCS SSSPVHTNRS NIQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	6e-27	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OIT01330