PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT01223

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 205aa MW: 23237.3 Da PI: 8.813

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT01223	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	109.6	2.4e-34	11	105	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCa+Ck++r+kCa+ C+lapyfpa+++++f++vhk+FG+snv+kl+kal+ee+r++a++slv+ A +r+rdPv G++g ++++ ++l+ k++ + OIT01223 11 ACASCKYQRKKCADTCILAPYFPAAKNREFQAVHKIFGVSNVTKLIKALNEEDRKKAADSLVWDAFCRQRDPVLGSYGEYRRVVEELKLYKSQYQ 105 7***********************************************************************************99999988766 PP

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence
MQKINSRDTA ACASCKYQRK KCADTCILAP YFPAAKNREF QAVHKIFGVS NVTKLIKALN 60 EEDRKKAADS LVWDAFCRQR DPVLGSYGEY RRVVEELKLY KSQYQQILQM PSQGATGLMY 120 NAAQGLNNGY NNRANSIMES WPCSNNIHLQ YVQNMEKLRS DSNGSTIIVP QQAIDGFTNH 180 YYLTAGNCNP IDVKRMENSL WEASS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	9e-48	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT01223