PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT00961

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 416aa MW: 46437.9 Da PI: 7.2431

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT00961	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.8	1e-32	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl OIT00961 44 KPRLKWTPDLHERFTEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 98 79****************************************************8 PP
2	Myb_DNA-binding	60.5	3.5e-19	46	97	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r++WT++++e++ +av+qlGg t+k++ + mg +g+tl+++ks++qky+ OIT00961 46 RLKWTPDLHERFTEAVNQLGGAdkaTPKSVLKLMGiQGLTLYHLKSHLQKYR 97 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MYHHHRQDKS MHPSTRMSIS ERHLFLQGGN GNGDSGLVLS TDAKPRLKWT PDLHERFTEA 60 VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANASG ANKAVAAAGE 120 DRMSENSATC MSNPSIGPQP NKNIQISEAI QIQIEVQRRL HEQLEVQRHL QLRIEAQGKY 180 LHAVLEKAQE TLGRQDMGTV GLEAAKVQLS ELVSTVSNQC LNPTFSDIKE LSRFSSQQTQ 240 ATQLADRSID SCLTSCEGSL RDNTMHNNQI GLRPFEFTPS IECKDIENDT RIQQTALRWC 300 DNLKESNKLF SAMNEGKEKK FTTETNCKDL SMSIGLQDGN LDGSSNHSDG KFNGTDTTVR 360 LFHQAANRGD SMPERQKSSQ EYKLSYFAPK LDLNMHDETD AASSCKQFDL NGFSWT

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MYHHHRQDKS MHPSTRMSIS ERHLFLQGGN GNGDSGLVLS TDAKPRLKWT PDLHERFTEA  60
VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANASG ANKAVAAAGE  120
DRMSENSATC MSNPSIGPQP NKNIQISEAI QIQIEVQRRL HEQLEVQRHL QLRIEAQGKY  180
LHAVLEKAQE TLGRQDMGTV GLEAAKVQLS ELVSTVSNQC LNPTFSDIKE LSRFSSQQTQ  240
ATQLADRSID SCLTSCEGSL RDNTMHNNQI GLRPFEFTPS IECKDIENDT RIQQTALRWC  300
DNLKESNKLF SAMNEGKEKK FTTETNCKDL SMSIGLQDGN LDGSSNHSDG KFNGTDTTVR  360
LFHQAANRGD SMPERQKSSQ EYKLSYFAPK LDLNMHDETD AASSCKQFDL NGFSWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-120	G2-like family protein

Link Out ? help Back to Top
Ensembl	OIT00961