PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT00828

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 353aa MW: 40117.1 Da PI: 4.8565

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT00828	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.6	6.2e-36	36	127	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye++ed++++ +isws+ nsf+v+d+++f++++Lpk+Fkhsnf+SF+RQLn+YgF+kv+ ++ weF+++ F g+k+ll++ik OIT00828 36 FLSKTYEMVEDPSTDAVISWSRARNSFIVWDSHKFSTTLLPKHFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHLLKTIK 123 9**************************************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+++ OIT00828 124 RRRN 127 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MEKGVRVKRE EEDVATAVTA APLPMEGLHD VGPPPFLSKT YEMVEDPSTD AVISWSRARN 60 SFIVWDSHKF STTLLPKHFK HSNFSSFIRQ LNTYGFRKVD PDRWEFANEG FLGGQKHLLK 120 TIKRRRNVGQ SMNQQGSGPC IEIGYYGMEE ELERLKRDKN LLWTEIVKLR QQQQSTRNQI 180 IAMGEKIEST ERKQEQMMSF LAKIFSNPTF LQQYLDKCVQ RKDKQRIEVG QKRRLTMTPS 240 SENLQDFVSV ANGSDQPMNY STRDRETELT NMGSDMAMLF SAALDNKSSS NARSASVVTA 300 SATDMDLVPE NIWEELLGED LISGDGAEEV LVIDQPELDV EVEDLVGTTS DWG

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MEKGVRVKRE EEDVATAVTA APLPMEGLHD VGPPPFLSKT YEMVEDPSTD AVISWSRARN  60
SFIVWDSHKF STTLLPKHFK HSNFSSFIRQ LNTYGFRKVD PDRWEFANEG FLGGQKHLLK  120
TIKRRRNVGQ SMNQQGSGPC IEIGYYGMEE ELERLKRDKN LLWTEIVKLR QQQQSTRNQI  180
IAMGEKIEST ERKQEQMMSF LAKIFSNPTF LQQYLDKCVQ RKDKQRIEVG QKRRLTMTPS  240
SENLQDFVSV ANGSDQPMNY STRDRETELT NMGSDMAMLF SAALDNKSSS NARSASVVTA  300
SATDMDLVPE NIWEELLGED LISGDGAEEV LVIDQPELDV EVEDLVGTTS DWG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	125	LKTIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	1e-118	HSF family protein

Link Out ? help Back to Top
Ensembl	OIT00828