PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT00757
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 521aa    MW: 58173.1 Da    PI: 6.7143
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT00757genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.18.9e-1391515211374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l+++L++cA+avs+gdl  aq l+++l++++s +g+p+qRl ay++e+L arla s+s+++k+l+++e +   s e l+++++++e++P++kf+++ aN a
  OIT00757 151 LKHVLIACAKAVSDGDLLTAQVLISELRQMVSVSGEPIQRLGAYILEGLVARLAASGSSICKSLRCKEPA---SFELLSYMHMLYEICPYFKFGYMSANGA 248
               689******************************************************************9...9*************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++R+Tg+++++s   +   l+ +g+rL+k+A++++vpfef++ +a + +d+++e+L ++pgE
  OIT00757 249 IAEAMKDENRVHIIDFQIAQGSQWVTLIQAFAARPGGPPHIRVTGIDDSTSAyaRGGGLNIVGQRLSKLAKAFKVPFEFHA-AAISGSDVQVENLGIQPGE 348
               ************************************************998899999************************.8999*************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               alaVn+++ lh+++desvs+e++rd++L++vk+l+Pkvv++veqe+++n++ F+ rfle+l+yy+ +f+s++++lpr ++eri+vE+++l+r++vn++ace
  OIT00757 349 ALAVNFAFTLHHMPDESVSTENHRDRLLRMVKNLNPKVVTLVEQESNTNTAAFFPRFLETLDYYTGMFESIDMTLPRGHKERINVEQHCLARDVVNIIACE 449
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               g er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll+ +++  yr+ee++g+l+lgW++r Lv+ +aW+
  OIT00757 450 GIERVERHELLGKWKSRFRMAGFSPYPLSSLVNATIKRLLESYSD-KYRLEERDGALYLGWMNRDLVASCAWK 521
               ********************************************5.5*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    
MQASQRLRRS PMSNTLYYQP VQRAEAYCLP QFQTLDNHLS YINGSHGVYH SPSTASFSSN  60
GSSICHQESQ PYLSDVRQSS ETTNYGSPTS GSCITDGAND FMHKLKELET VMLGPDSDFL  120
ESYDNSLPSS IASTEINSWR QMMEAMPRRD LKHVLIACAK AVSDGDLLTA QVLISELRQM  180
VSVSGEPIQR LGAYILEGLV ARLAASGSSI CKSLRCKEPA SFELLSYMHM LYEICPYFKF  240
GYMSANGAIA EAMKDENRVH IIDFQIAQGS QWVTLIQAFA ARPGGPPHIR VTGIDDSTSA  300
YARGGGLNIV GQRLSKLAKA FKVPFEFHAA AISGSDVQVE NLGIQPGEAL AVNFAFTLHH  360
MPDESVSTEN HRDRLLRMVK NLNPKVVTLV EQESNTNTAA FFPRFLETLD YYTGMFESID  420
MTLPRGHKER INVEQHCLAR DVVNIIACEG IERVERHELL GKWKSRFRMA GFSPYPLSSL  480
VNATIKRLLE SYSDKYRLEE RDGALYLGWM NRDLVASCAW K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein