PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT00616
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 334aa    MW: 35641.3 Da    PI: 8.0688
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT00616genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-07171195327
               S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                e Cr +  +G C++G++C+F Hg+
  OIT00616 171 SEVCRWWGDSGKCRFGSKCRFVHGK 195
               6778888889*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MDFFYGDSND SQASKVQSLD VSPINSQNFI GRGRFYPGPK TRILDPYASS DSSGSSANRI  60
LSPLARYLHS RSPVPFASDS PERRSLINTS SRSGSGGGGG VFRSPLALIE NIEIPPAFRT  120
PVKVEEDVVV MDGILVEPKH GARAKSLPST SDSGGRLSSS TSGSDNSSHK SEVCRWWGDS  180
GKCRFGSKCR FVHGKEDLRP TAFANRNQSE APSSRSYSSG SCAYGPRGRS AHHQAHSAAS  240
STESAAMATP TTVKKVVSTK DKEPPSSDSS PSSTTSTIAI SGTDWSPLDD NIEVSLPCGE  300
KCPSREDVDA HIQTVLYGLS GRKRLPVCVE FSEE